Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1320 atgtCCCCAGCAGGTTCATCAAGATGGAGCCCTACCACAGAACAGCTCATGATCTTGGAGGAACTGTACAGGAGTGGGATTAGAACTCCCAGTGCCTCTCAAATTCAGCAAATAACAACACACCTTTCCTTCTATGGAAGGATAGAAGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGGCAGAAGCTCAGAAGGAAACTCAACAAACAACTGCAGCTACAGCAACAACAACTCCATCATTGCCAACTCAATCAGGATATCACTAACCATTTTGTTGGTACCTTTGGTTATAGTACTACTCCTCGTTCTACTACCCAagattttcccttttttaactCAGCTAGCTTGCTTTTTCAGGGAGGAGATGCAAACACATCAGAACAGGCATTGAATTGCAAATGGAGTGTGCATAACCCGCAAAGTAATTTGgtggagaagaaagagaatgacATTCTGCAACTATGGTTGGACCCTTGTGGATGTTGA 501 0.4032 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQLHHCQLNQDITNHFVGTFGYSTTPRSTTQDFPFFNSASLLFQGGDANTSEQALNCKWSVHNPQSNLVEKKENDILQLWLDPCGC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1320 166 Coils Coil 69 89 - -
Ssu3g1320 166 PANTHER WUSCHEL-RELATED HOMEOBOX 3 1 153 - -
Ssu3g1320 166 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Ssu3g1320 166 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Ssu3g1320 166 CDD homeodomain 8 67 IPR001356 GO:0003677
Ssu3g1320 166 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Ssu3g1320 166 Gene3D - 3 67 - -
Ssu3g1320 166 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 153 IPR044555 GO:0003700|GO:0099402
Ssu3g1320 166 SMART HOX_1 4 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1320 Ssu-Chr3 32804195 32805176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1320 1 74 Wox Gene Family AT2G28610 83.784 7.58e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu3g1320 Homeodomain 4.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1320 - - gmx:102663963 236.113