Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1315 ATGGGCAACCGAATCGGCAGCCTCTGCCTCTGTTCCGCCGGCGCCGCCTCCGGGAGGTTCGAGAACAGAGTTTCCTTGCCCTCCAAGCAATACCAAAACTCCCTCGGAAACTCCATCTGCTACGTGAGACCCGACACGTGTCGGTTCTCCGGCGAGGCGTTTTCCGACGACGACGTCGCCCTCATGACTTTCCGGTCGGTCTCCGGCGCCACCGTGAGTGCAAACTCGTCAGCGACGCCTTCGACCTCGCTCGAGGATTCGCTCCAACATGGCACCGTTTTGGATTCCTCTGCTTCGTTCGAGAGCTCCGCCTGCTTCACTTCCAGCTTGGTGCCTTTTCAGCATCAACATGCTGATCGTGGATTCTCTGTGGGGGGCTCCACGGTAAGAGGGTCATCGTGGGATGGCTCCATTGAGAAAGGTTCTTATGAGGTACCAACGAAGAAGGTGAAGagaggtaaaagaaaattgaagaaggTTCTGAGTGGAGCGTTTTTGAGCAAGGTTTCTATTGGTGGGAGAATgtcaattttgaagaaaaatgataacGCTGATGCCAGAGTGAGTTGTAGTACTAGTTTGAGTGCTGAGATGAGTTTGCATGGTGTTGAGGGTGATAATAACTATTTgggtggtgatgatgatggtggtgggtGTGATGTGTTGATGGGGTGTGAGAATCTTCATTGGGCTCAAGGGAGAGCTGGTGAGGATCGTGTGCATATTGTGATCTGTGAGGATCATGGATGGGTTTTTGTGGGGATTTATGATGGGTTTAATGGCCCTGATGCCACTGATTTTCTTCTCAACAATTTGTTTTATGCTGTGAATGATGAGCTCAAGGAGATGTTGTGTGGTCACAACAAGTTCGAATCCATGGCTATGGATTCGGACTCTTTGGAGTTGGAGGAGAAGGTGTTGTTATCATCAGTTAAGGAAAATGGGGTGGTTGAAGGTTCTTGTTCTTCAggtgaaaataaagaaaattatccaATAGGAAATGGAAAGTTAAATTTGGAATGTGTGTCACAAGGAGTAGAGGGGATGAATGGGATAAATGGTGAAAAAGTGGGCTTGACTCACTCAGATGTGTTGCAAGCTCTTTCAGAGGCATTGAGGAAGACTGAGGAAGCATTTCTGAGGATTTCTGATGAGATGATTGGTCACAACCCTGTGTTGGCTATGATGGGTTCTTGTGTCTTGGTGATGTTGATGAAGGGTCAAGATGTTTACTTGATGAATGTGGGAGATAGTCGCGCTGTGTTGGCCACTCACACTGGGGATTCTCTTCAGCTCACCATGGAGCATAGCACTCACGTGAAAGAGGAGGTTTACAGAATCAGCAGGGAGCACCCTGATGACCCTTCAGCAGTAACCAAAGGCAGGGTGAAGGGTCGCTTGAGTGTCACAAGGGCTTTTGGGGCAGGGTTCCTTAAGCAGCCTAAGCAAAACAATGCAGTGTTAGAGACTTTCAGAGTGAGCTACATAGGGGATTCCCCATACATCACATGTTTCCCTTcactccaccaccacaagctcaGTCCAAATGACAAGCTCCTGATATTGTCTTCAGATGGACTTTACCAATACTTCACCAATGAAGAAGCAGCTGCCAAAGTGGAGTCATTCATCACTATGTTTCCAGATAGAGATCCTGCACAACTTCTCATTGAAGAAGCACTAGGTCGAGCAGCAAAAAAGGCTGGAATGGAGTTCCATGAGTTGCTTGATATTCCACATGGGGAACGCCGTCATTACCATGATGACATTTCTATTGTCATAATCTCCTTGGAGGGAAAAATATGGCGTTCATTGTAA 1818 0.4494 MGNRIGSLCLCSAGAASGRFENRVSLPSKQYQNSLGNSICYVRPDTCRFSGEAFSDDDVALMTFRSVSGATVSANSSATPSTSLEDSLQHGTVLDSSASFESSACFTSSLVPFQHQHADRGFSVGGSTVRGSSWDGSIEKGSYEVPTKKVKRGKRKLKKVLSGAFLSKVSIGGRMSILKKNDNADARVSCSTSLSAEMSLHGVEGDNNYLGGDDDGGGCDVLMGCENLHWAQGRAGEDRVHIVICEDHGWVFVGIYDGFNGPDATDFLLNNLFYAVNDELKEMLCGHNKFESMAMDSDSLELEEKVLLSSVKENGVVEGSCSSGENKENYPIGNGKLNLECVSQGVEGMNGINGEKVGLTHSDVLQALSEALRKTEEAFLRISDEMIGHNPVLAMMGSCVLVMLMKGQDVYLMNVGDSRAVLATHTGDSLQLTMEHSTHVKEEVYRISREHPDDPSAVTKGRVKGRLSVTRAFGAGFLKQPKQNNAVLETFRVSYIGDSPYITCFPSLHHHKLSPNDKLLILSSDGLYQYFTNEEAAAKVESFITMFPDRDPAQLLIEEALGRAAKKAGMEFHELLDIPHGERRHYHDDISIVIISLEGKIWRSL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1315 605 PANTHER PROTEIN PHOSPHATASE 2C 19 605 IPR015655 GO:0004722|GO:0006470
Ssu3g1315 605 Coils Coil 365 385 - -
Ssu3g1315 605 ProSiteProfiles PPM-type phosphatase domain profile. 222 597 IPR001932 -
Ssu3g1315 605 CDD PP2Cc 235 597 IPR001932 -
Ssu3g1315 605 Gene3D - 215 603 IPR036457 -
Ssu3g1315 605 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 19 605 - -
Ssu3g1315 605 SUPERFAMILY PP2C-like 234 598 IPR036457 -
Ssu3g1315 605 SMART PP2C_4 221 595 IPR001932 -
Ssu3g1315 605 Pfam Protein phosphatase 2C 361 565 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1315 Ssu-Chr3 32706075 32708878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1315 1 604 PP2C-type Phosphatase Gene Family AT1G07630 43.814 1.87e-166 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1315 - K01102 gmx:100804061 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1315 3 32706075 32708878 Ssu3g1315 3 32706075 32708878 ECH