Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1311 ATGGCTGCTACtccaaaacccatcaaatcctcCACCCCCAAGAAACTCTCCAACTCCAACAGCCCCATTTCAGTTTCCAAGGTGAGGGTCATCGTCAGGGTCAGGCCCTTCCTCGCGCACGAAACCTCAGCAAGAAACGGCGACCCCATTTCGTGCATCTCCGTCCTGGACCACGATTTCGTGTCTCCACAGGAAGAGGTTGCCGTGTATCTCAATGACCCACTAACCAGCCGGAACGAGTGCTACCAGTTGGACTCTTTCTTTGGGCAAGAGGATGAGAATGTGGGTCAGATATTCTGCAGAGAAGTGAGTCCCTTGATTCCGGGAATGTTTAGTGGATGCAACGCCACGGTGTTTGCTTATGGGGCTACTGGCAGTGGCAAGACATACGCTATGCAGGGAACCGAGGAACAACCTGGCTTGATGCCACTGGCAATGTCCATGATCCTGTCTATTTGCCGGAGCACTGGCAGCACAGCACAAATTTCATACTATGAGGTCTACATGGACAGATGCTACGACCTCTTGGAGGTCAAGGCAAAGGAGATTTCAGTCTGGGATGACAAAGATGGGCAAATTCACCTCCGGGGACTATCTCAGGTTCCTATAAACACAATGTCAGAATTTCAAGATGTTTTCTCTTGTGGAGTTCAGCGACGCAAAGTTGCACATACAGGCCTCAATGATGTCTCTAGTAGGAGTCATGGAGTGCTTGTGATATCTGTGTCCACTCCTTCAGCTGATGGCACTGGAACTGTTGTACGTGGAAAGTTGAATCTCATAGACTTGGCAGGTAATGAAGACAACAGAAGGACCTGCAATGAAGGGATTCGTCTCCAAGAGAGTGCCAAGATAAACCAGTCCTTGTTTGCACTGTCAAATGTGATATACGCATTGAACAACAATAAACCAAGAGTACCCTACCGAGAAAGCAAATTGACCCGTATATTGCAGGACTCCCTAGGCGGAACAAGTCGTGCACTGATGGTTGCTTGCCTGAATCCAGGAGAATACCAGGAATCTGTTCATACTGTTAGTTTAGCTGCTCGATCAAGGCATGTCTCTAATTTTGTACCTTCAGCTCATAAACAAGAGACCCCAAAAGTTAAAGTTGACATGGAAGCAAAATTGAGAGCTTGGCTAGAATCAAAAGGCAAAACAAAGAGTGCACAAAGACTTGGGGCATTTAATTCTCCACTTCCGAAAAAAACTCCCAGTTCCATCATTACTCCTGCAAAGAGATCCATTACCTTTAATAGTTCAGTAAAGGGGGGAGGAACTGCCATCAACCTAGATGCTCAACATACTAATGAAAGGGCCTTTGCTGTGGCTTTTGGAAATTTACTAGATGTTGAAGGTTACTTTGATTCGTGCATGGAGAACGCACCATGTAGTGTCAAGGACAATGATAACAAAGAGACTGAGCATGATGCCAATAAGTCTGCATGGGAATCATACAAAAATCTACCTGTTGAGCCATTGAGCAAGGTTgtgaattcaattacaaatgaGAGTAAAGATGCAGCACAAAGTCCTTTAAGAAAAGCCCTCTCCCCCATCAACGTCAATGGTAATCAAAAACCCCTGGAGGCATTGTCTTTCACACAAACACCTTTTTTGGCAACCTGCTCCACTAATAAAGGGATACAAAAGAATGACACTCCACTTGACAAATTCAGCACACGAGGTTCTACGCTGAAGaACTGTCTAGTCCAAGAATACATTGATTTCTTGAATAATGCAAGCAGAGAGGAACTACTTGAGTTAAAGGGCATAGGAGAGAAAATGGCAGAATACATAATAGACCTTAGAGAAGAAAGTCCACTAAAATCGTTAAATGATTTGGAGAAGATAGGCCTCTCTTCCAAGCAGGCCCATAACCTGTTCACAAAAGCTGCAAAAAACCTATTCGAAGATAAAGCTGAAGATTCAATAGTCACTTGA 1944 0.4403 MAATPKPIKSSTPKKLSNSNSPISVSKVRVIVRVRPFLAHETSARNGDPISCISVLDHDFVSPQEEVAVYLNDPLTSRNECYQLDSFFGQEDENVGQIFCREVSPLIPGMFSGCNATVFAYGATGSGKTYAMQGTEEQPGLMPLAMSMILSICRSTGSTAQISYYEVYMDRCYDLLEVKAKEISVWDDKDGQIHLRGLSQVPINTMSEFQDVFSCGVQRRKVAHTGLNDVSSRSHGVLVISVSTPSADGTGTVVRGKLNLIDLAGNEDNRRTCNEGIRLQESAKINQSLFALSNVIYALNNNKPRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHTVSLAARSRHVSNFVPSAHKQETPKVKVDMEAKLRAWLESKGKTKSAQRLGAFNSPLPKKTPSSIITPAKRSITFNSSVKGGGTAINLDAQHTNERAFAVAFGNLLDVEGYFDSCMENAPCSVKDNDNKETEHDANKSAWESYKNLPVEPLSKVVNSITNESKDAAQSPLRKALSPINVNGNQKPLEALSFTQTPFLATCSTNKGIQKNDTPLDKFSTRGSTLKNCLVQEYIDFLNNASREELLELKGIGEKMAEYIIDLREESPLKSLNDLEKIGLSSKQAHNLFTKAAKNLFEDKAEDSIVT 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1311 647 SUPERFAMILY RuvA domain 2-like 573 619 IPR010994 -
Ssu3g1311 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 380 IPR027417 -
Ssu3g1311 647 SMART kinesin_4 25 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 ProSitePatterns Kinesin motor domain signature. 256 267 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu3g1311 647 Gene3D - 565 635 - -
Ssu3g1311 647 Gene3D Kinesin motor domain 24 394 IPR036961 -
Ssu3g1311 647 Pfam Helix-hairpin-helix motif 578 618 - -
Ssu3g1311 647 PANTHER BNACNNG40390D PROTEIN 17 646 - -
Ssu3g1311 647 Pfam Kinesin motor domain 33 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 ProSiteProfiles Kinesin motor domain profile. 27 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 PRINTS Kinesin heavy chain signature 306 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 PRINTS Kinesin heavy chain signature 225 242 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 PRINTS Kinesin heavy chain signature 257 275 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 PRINTS Kinesin heavy chain signature 113 134 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1311 647 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g1311 647 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 17 646 - -
Ssu3g1311 647 CDD KISc_KID_like 28 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1311 Ssu-Chr3 32580984 32585196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1311 27 386 Calmodulin-binding Proteins AT5G65930 31.016 2.83e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1311 K10403 - gmx:100804591 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1311 3 32580984 32585196 Ssu3g1311 3 32580984 32585196 ECH