Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1310 ATGTTTCATGATTTTGGGTTCTTGAAGGATATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCAGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATGTGTAGCCCCGCATCCACATCACCCTCACATCGGAGAACCACTGGCCCTATAAGGCGCGCTAAAGGTGGCTGGACAGCACAGGAGGATGAGACATTAAGAAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTATTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGgatgataaaattgttgaacTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGTATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTGAACCCTGACATAAAGAAGGATGCCTGGACTTTGGATGAGGAATTAGCCCTGATGAATGCGCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCCAAGAATAGTCCACAAGTTGCTGTCAAAGATTCAATTAGACATTCTGCTAGTAAAACAATACTTGtttgttcaaataaagaattaaatgcaGCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAGGAATCAGTTTGACTCCTTAGGAACAGTTAGAGAAACTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCCGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCCAACATCGATCTTAGCTGTAGCAACTCAGAACAAGTGTCAAGAGCTAATTTTGGAATAACTTATGGGCCAAGATCTGAGAATTCTGGACTCAATGTAAACTCTACCTTTGAGCATTGTACAAACAATGGTAACATGAGTAGTACCAGGTTAACCGGAACATCTTCGCAAGAAAGTCCAACCTGTGGTTCTCTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGattctctttatttaaattatatttgccaGCAGAAGGAGTACTGTTCGAGTCCAACATTGTCACCTATTGGTTTCTTCACTCCACCTCGTGTGAAGGGTACTGAATTATGCGCTGAGACACCTGAATCAATATTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGGAGAACCGGAGTCCAAACACTTACCAGTCCTAGTAAAGTTTTGAAGGTAGGTAATGAGCCACATACTTCAAATGAAACAGAGAGAACCAATGATGATTCTGGTTCTGGGCGTTTCTCTGGAAGTCCAGCAAGCCATGGCAATGGGATTGACATTCCCAATAATAAGGCATTCAATGCATCTCCCCCATACAGGTTAAGATCCAAGCGAACAGCGATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGAAGACCAGAGGAGCAATGTCATGACCGAAGATTGTCTGCATGAAACAAAATTGGTTGTGACATAG 1713 0.4104 MFHDFGFLKDMAEVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGMCSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEYFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLDEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVAVKDSIRHSASKTILVCSNKELNAAVETSSETTAISKLDDSGRNQFDSLGTVRETGDSSSVPANESADSDCVECKPGSSNIDLSCSNSEQVSRANFGITYGPRSENSGLNVNSTFEHCTNNGNMSSTRLTGTSSQESPTCGSLCYEPPQLDGSVPIDSLYLNYICQQKEYCSSPTLSPIGFFTPPRVKGTELCAETPESILKKAANTFPNTPSILRRRRTGVQTLTSPSKVLKVGNEPHTSNETERTNDDSGSGRFSGSPASHGNGIDIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNEDQRSNVMTEDCLHETKLVVT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1310 570 CDD SANT 73 116 IPR001005 -
Ssu3g1310 570 Gene3D - 122 173 - -
Ssu3g1310 570 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Ssu3g1310 570 PANTHER MYB-RELATED PROTEIN B-LIKE 29 492 - -
Ssu3g1310 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 116 IPR017930 -
Ssu3g1310 570 SUPERFAMILY Homeodomain-like 119 215 IPR009057 -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 48 62 - -
Ssu3g1310 570 Gene3D - 175 246 - -
Ssu3g1310 570 SUPERFAMILY Homeodomain-like 67 123 IPR009057 -
Ssu3g1310 570 CDD SANT 124 168 IPR001005 -
Ssu3g1310 570 CDD SANT 176 219 IPR001005 -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 453 522 - -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 31 75 - -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 292 308 - -
Ssu3g1310 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 172 IPR017930 -
Ssu3g1310 570 Gene3D - 69 121 - -
Ssu3g1310 570 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 493 514 - -
Ssu3g1310 570 SMART sant 173 221 IPR001005 -
Ssu3g1310 570 SMART sant 69 118 IPR001005 -
Ssu3g1310 570 SMART sant 121 170 IPR001005 -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 292 311 - -
Ssu3g1310 570 Pfam Myb-like DNA-binding domain 70 116 IPR001005 -
Ssu3g1310 570 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
Ssu3g1310 570 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Ssu3g1310 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 223 IPR017930 -
Ssu3g1310 570 PANTHER MYB PROTEIN-RELATED 29 492 - -
Ssu3g1310 570 ProSiteProfiles Myb-like domain profile. 117 168 IPR001005 -
Ssu3g1310 570 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1310 Ssu-Chr3 32557036 32572425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1310 2 562 MYB Transcription Factor Family AT3G09370 47.304 4.71e-157 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g1310 Myb_DNA-binding 6.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1310 K09422 - gmx:778081 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1310 3 32557036 32572425 Ssu3g1310 3 32557036 32572425 ECH