Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1307 ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATACTTTACTACGCGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATTAAGAAAGGATCTCTTACTGAGGAAGAGCAGCGTCTTGTGATCAACCTTCAAGCAACACACGGGAACAAGTGGAAGAAAATTGCCGCACAAGTCCCGGGTCGCACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAGCAAAGAGAAACGAAGGGGAATAACTGCACCATCGACCCAATTAACGATAGCAAGTACGAGCATATACTGGAGAGTTTTGCAGAGAAACTAGTGAAAGAACGGCCTTCACCATCATTTGTTATGGCTTCATCTAACAGTTCTTTTCTGCACACTGATGCACCGGCCCCTGCCCCGGCCTTGCTTCCGTCTTGGCTTTCCAATTCTAACGGCACTGCACCTGTGAGGCCGCCTTCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCAACGGTGGCAGCGCCTCCTCCGTGGTTGCAAACCGTGAGAGGACCAGAGAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCACCTCATGGGGCTGTTCTAGTATTTGGTGAAAACATGGTCATGTCTGAGTTGGTGGAGTGCTGTAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCGCATAAGAAGGAGGCGGCATGGCGGTTAAGTAGGGTAGAGCTGCAGTTGGAGTCTGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAGGTTGAAGCAAAGATCAAAGCTCTCAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAGTACAGGGAACAGTTGGCTGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACCAAGTTTCTAGAACAGGTAGGTTGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG 1071 0.4939 MKDRQRWRAEEDTLLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTIDPINDSKYEHILESFAEKLVKERPSPSFVMASSNSSFLHTDAPAPAPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLQTVRGPENAAPLVLGNVAPHGAVLVFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKIKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLSEPNGR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1307 356 CDD SANT 6 53 IPR001005 -
Ssu3g1307 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Ssu3g1307 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Ssu3g1307 356 Coils Coil 266 303 - -
Ssu3g1307 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 356 - -
Ssu3g1307 356 SMART sant 58 106 IPR001005 -
Ssu3g1307 356 SMART sant 3 55 IPR001005 -
Ssu3g1307 356 CDD SANT 63 104 IPR001005 -
Ssu3g1307 356 Coils Coil 305 325 - -
Ssu3g1307 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Ssu3g1307 356 Pfam Myb-like DNA-binding domain 7 67 - -
Ssu3g1307 356 Gene3D - 4 58 - -
Ssu3g1307 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Ssu3g1307 356 Gene3D - 62 123 - -
Ssu3g1307 356 PANTHER TRANSCRIPTION FACTOR AS1 1 356 IPR031055 GO:0005634|GO:0006351|GO:0010338
Ssu3g1307 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1307 Ssu-Chr3 32456116 32457186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1307 1 347 MYB Transcription Factor Family AT2G37630 65.847 1.87e-156 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g1307 Myb_DNA-bind_6 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1307 K09422 - gmx:100819082 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1307 3 32456116 32457186 Ssu3g1307 3 32456116 32457186 ECH