Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1305 ATGGGTGCTTGCTGGAGTAATAGGGTCAAGTCTGTGAGTCCTTCCAATACAGGGTTCACTTCTAGAAGTGTCAGTAGGAGTGGTCATGAGAACAGCTCAAATAGCAGGAACTCATCTGCGTCCATATCCGTCACTTCTCGGAGTGAGGGTGAGATCTTGCAATCTTCCAACTTGAAAAGCTTCAGCTATAATGAGCTAAGAGCGGCCACAAGAAACTTCCGCCCGGATAGTGTCTTGGGGGAGGGTGGGTTTGGTTCAGTTTTTAAGGGATGGATTGATGAGCATTCACTTGCTGCCACCAAACCGGGAATAGGCATGATTGTTGCTGTCAAGAGGCTTAACCAAGATGGGTTCCAGGGTCACAGAGAATGGTTGGCTGAGATCAACTATCTTGGGCAACTGCAGCATCCTAACCTTGTCAAGTTAATAGGATACTGCTTTGAGGATGAGCATCGGCTTCTGGTTTATGAATTTATGCCCAAGGGTAGCATGGAAAATCATTTGTTCAGAAGAGGTTCTTACTTTCAGCCATTCTCTTGGAGTTTGCGAATGAAAATAGCACTTGGGGCTGCAAAGGGCCTTGCTTTTCTTCATAGTACAGAACCTAAAGTCATATACCGCgacttcaaaacttcaaatatCCTACTCGATACAAACTATAATGCCAAACTTTCTGATTTTGGATTGGCCAGAGATGGTCCAACTGGTGATAAAAGTCATGTCTCTACTAGGGTCATGGGAACCCGTGGATATGCGGCACCAGAGTATCTAGCAACAGGTCATCTCACTACCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGATATCAGGAAGACGAGCTATAGACAAGAACCAGCCAACTGGAGAGCATAACCTTGTTGAATGGGCCAAGCCTTACCTATCTAATAAACGTAGAGTTTTTCGTGTAATAGATCCACGCTTGGAAGGTCAGTATTCACATAGTCGAGCTCACGCAGCAGCTGCACTTGCTATGCAATGTCTCTCTGTAGAGCCTAAGTGTAGGCTAAACATGGATGAGGTGGTGAAAGCATTGGAGCAGCTTCAGGAATCAAAGGACATGCAGAGAAAAGGTGTTGATCAGAAACAGCATCATGTACGCAATTCTGTACTCGGCCGTTCCAACGGTGGCGATGGTGGTACAGATGTGCCTAGAAAGCCTTCTGCTTATCCCAGACCTTCTGCTTCTCTCCTTCGCGGTTGA 1233 0.4517 MGACWSNRVKSVSPSNTGFTSRSVSRSGHENSSNSRNSSASISVTSRSEGEILQSSNLKSFSYNELRAATRNFRPDSVLGEGGFGSVFKGWIDEHSLAATKPGIGMIVAVKRLNQDGFQGHREWLAEINYLGQLQHPNLVKLIGYCFEDEHRLLVYEFMPKGSMENHLFRRGSYFQPFSWSLRMKIALGAAKGLAFLHSTEPKVIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTRGYAAPEYLATGHLTTKSDVYSFGVVLLEMISGRRAIDKNQPTGEHNLVEWAKPYLSNKRRVFRVIDPRLEGQYSHSRAHAAAALAMQCLSVEPKCRLNMDEVVKALEQLQESKDMQRKGVDQKQHHVRNSVLGRSNGGDGGTDVPRKPSAYPRPSASLLRG 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1305 410 MobiDBLite consensus disorder prediction 8 46 - -
Ssu3g1305 410 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1305 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Ssu3g1305 410 PANTHER OS01G0588500 PROTEIN-RELATED 22 396 - -
Ssu3g1305 410 MobiDBLite consensus disorder prediction 362 410 - -
Ssu3g1305 410 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Ssu3g1305 410 PANTHER KINASE 1B 22 396 - -
Ssu3g1305 410 MobiDBLite consensus disorder prediction 1 46 - -
Ssu3g1305 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Ssu3g1305 410 MobiDBLite consensus disorder prediction 362 377 - -
Ssu3g1305 410 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1305 410 Gene3D Transferase(Phosphotransferase) domain 1 159 383 - -
Ssu3g1305 410 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1305 Ssu-Chr3 32386251 32389072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1305 27 363 Glycoside Hydrolase AT3G07070 47.801 1.01e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g1305 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1305 - - gmx:100793817 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1305 3 32386251 32389072 Ssu3g1305 3 32386251 32389072 ECH