Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1301 ATGCAAAGGTTGATGATAATGGATCCACGTCTTCGTGGGTTTGGTGGTTCCCCTAATGAAATCCGGTTGGGGAATCAGTCTTTGCCGAGTCTGCAGAATCAGGGATTTGAAAACGGTTTCTTTGACCAAAGTAGGGAATTTGGTTACCTTCAGTCCAGTCTAGCACCTACTAATAACACACCTTCAGCCTCGGTTTTGACTCATGAGGAACCTTCTCCGGAGGATTGTGAATTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAAGAAGACATGGAGGATAAGACATGCATGCTGCAAGATTCTTTGGATCTTCAAATTGCTGAGAAATCGTTCTATGAGGTGATAGGTGAAAAGTACCCTTCTTCGCCTTTAGGAAATCCAGGTCCTGTTGATCCAGATGATGGGGCTGGGGATCATAATTTCTCTGAAAATTATGGTTCTTGTTCTTATAATGATGGTGATCTCAGTAGTATTTTTACTAACAATTCTTTGCACCGAAACTTGGGGGAACTTCCTAGCCAGAATTTTCAAGGCAATAACTTTTCGCAGTCATCTTATAGCTCTTCAAACAGTGTGATAAGTAGTGTGGAAGGGCCTGTGGACTCTCCAAGCAGTATACTCCAGGTTTCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAGTTTCAGAAGGGTGTTGAGGAGGCTAGCAAGTTTCTTCCAAGTGGAAATGGGCTCTTTGCTAATTTGGGTGTGGCTAGTTTTTCAACACTAGAGCCTAAAATGGGGAGTGATGAATTGTCTGTTAAGGTGGAGAAGGATGAGGGGGAGTCTTTTCTTGCTGGATCCAAAGGGAGGAAGCATCATCCCAGGGTGGAGGGGGATGCTGAAGAAAATAGAAGCAGCAAGCAAGCAGCGATTTACTCAGAACCTACATTGCGATCATCTATGATTGATATAATCCTGCTTCATAGTTTAGGGGATGGTAGGAGGCATTTTATGGCCCGTCGTGATGCTTTGCAATCTAAGAATGATAAGACAGTGCTGTCAAATGGTAAATCAAAGGCTTCTGGCAAGGGACgtagtaagaaacaaaatggGAAAAGGGAAGTGGTTGATTTGAGAACACTTTTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTATAAAGGCGCGCATGAGTTGCTAAAGCAGATCAGGCAGCACTCAAATGCTTTCGGGGATGGAAATCAGAGGTTGGCTCATATCTTTGCCGATGGCCTTGAAGCACGCCTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTTGTTAGTAAGAGAACATCAGCTACTGATTTTCTGAAGGCCTATCATTTATATCTTGCTGCTTGCCCTTTTAGGAAGATGACTAGTTTTATCTCTAATGTTACAATAAGGAAATCTGGAGCAAATTCAGCAAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAGTGGCCTACTTATATTCAGAGACTTTCATTAGCATTTGAAGCACCACCTAAACTTCGGATTACAGGAATAGACTTCCCACAGCCTGGTTTCAGGCCTGCCGAGAGAATTGTAGAAACTGGACGCCGCTTGGCAGCGTATGCTGAATCTTTTAAGGTGCCATTTGAGTATAATGCTATAGCGAAAAAATGGGAAACAATTCAACTTGAGGAACTCAAGATTGATAGGGATGAGTACCTTGTTGTTACCTGTTTTTATCGCGGTAAAAATGTGCTGGATGAATCTGTGGCTGTGGACAGTCCAAGGAATAAATTCCTCAGTTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTACTAATGGGGCCTTTAATGCGCCTTTCTTTGTTACTCGATTCAGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCTCGCGAGGACTGGGAGAGGATGCTAATTGAGAAAGACATACTTGGGAGGGAAGCATTGAATGTCATAGCTTGTGAAGGCTGTGAGAGAGTAGAGAGGCCAGAGACACATAGGCAGTGGCAAGCCCGTATTCTAAGGGCTGGATTTTTGCAACAATCTTTTGAGCGCGAGTTAGTCAAGAGGGCAATAGAGAAAGTAAGGACTAGCTACCACAAAGATTTTGTAATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGAATTGTTTTTGCCCTTTCTTGTTGGAAACCTGCATGA 2235 0.4273 MQRLMIMDPRLRGFGGSPNEIRLGNQSLPSLQNQGFENGFFDQSREFGYLQSSLAPTNNTPSASVLTHEEPSPEDCEFSDAILSYISQILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPSSPLGNPGPVDPDDGAGDHNFSENYGSCSYNDGDLSSIFTNNSLHRNLGELPSQNFQGNNFSQSSYSSSNSVISSVEGPVDSPSSILQVSDLNSESQSILQFQKGVEEASKFLPSGNGLFANLGVASFSTLEPKMGSDELSVKVEKDEGESFLAGSKGRKHHPRVEGDAEENRSSKQAAIYSEPTLRSSMIDIILLHSLGDGRRHFMARRDALQSKNDKTVLSNGKSKASGKGRSKKQNGKREVVDLRTLLVLCAQAVAADDYKGAHELLKQIRQHSNAFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSATDFLKAYHLYLAACPFRKMTSFISNVTIRKSGANSARVHVIDFGILYGFQWPTYIQRLSLAFEAPPKLRITGIDFPQPGFRPAERIVETGRRLAAYAESFKVPFEYNAIAKKWETIQLEELKIDRDEYLVVTCFYRGKNVLDESVAVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKDILGREALNVIACEGCERVERPETHRQWQARILRAGFLQQSFERELVKRAIEKVRTSYHKDFVIDEDSQWLLQGWKGRIVFALSCWKPA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1301 744 MobiDBLite consensus disorder prediction 52 73 - -
Ssu3g1301 744 PANTHER SCARECROW-LIKE PROTEIN 9 46 743 - -
Ssu3g1301 744 MobiDBLite consensus disorder prediction 52 67 - -
Ssu3g1301 744 MobiDBLite consensus disorder prediction 274 297 - -
Ssu3g1301 744 Pfam GRAS domain family 371 742 IPR005202 -
Ssu3g1301 744 ProSiteProfiles GRAS family profile. 362 742 IPR005202 -
Ssu3g1301 744 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 743 IPR005202 -
Ssu3g1301 744 MobiDBLite consensus disorder prediction 336 364 - -
Ssu3g1301 744 MobiDBLite consensus disorder prediction 122 147 - -
Ssu3g1301 744 MobiDBLite consensus disorder prediction 274 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1301 Ssu-Chr3 32138816 32141050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1301 55 743 GRAS Transcription Factor Family AT2G37650 52.908 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g1301 GRAS 3.1e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1301 - - ccaj:109816616 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1301 3 32138816 32141050 Ssu3g1301 3 32138816 32141050 ECH
Ssu3g1301 3 32138816 32141050 Ssu8g0450 8 7145915 7148328 ECH