Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1291 ATGTTTGAGTCAGCCATGTCAAAGACAATGATGGAGGAAGCAATGGCCACTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAGAGAGCTTTTAGATGATGGATCTCCCCTTCTTATGCTGCCAGAGAAGGGAACTCAACCCCCCAACACAAAAGCCTCTTCAAGTGACCAAGCCTTTAATAGGCTCATCTCCAACATTTACTCAGGACCTACCATCTCAGATATTGAAAATGCTTTATCAGTGACCAACAACCAAAGAGAGCACTTCCCACAACTCTCATCAGCTAGATTTTCCATATTGGAAAGGGGTTTGAGTAAGATTGAAAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGGAAATATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGCTACTATAGGTGCACCAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCAATGAGGACCCAGACACTCTTATCATAACCTATGACGGGCTACACCTGCACTTTGCTTACCCATATTTCCTCATGAGCCAACCCCAGCAATCTCATTCCTACCCACCAATCAAGAAGTCTAAGCCCACCTCTTTACAGGCCCAAGCCCAAGACTATAGAGCAGATGATGTTCACGAAGCCCAGCATACACAAGAAGCCCAAGCAAATGCTACTTTGGACATGATGTCAGCCACTTCATTGGACTCTCCACAAGGGATGGCCCAAGAAAATTTGGGCTCCCAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTAGGAACCCAGCAAACAGTGTCAATAGTTCTCACAcaaaattttcttgttcttcGTACCGTTCTCCTCCGTCATCACCTCTGTGGACTTCAACTTACTCCACCTCCTGTTATACCGTTGGCTTAAATTCTAGCACTTAA 945 0.4455 MFESAMSKTMMEEAMATWSEGSEDDDLVRELLDDGSPLLMLPEKGTQPPNTKASSSDQAFNRLISNIYSGPTISDIENALSVTNNQREHFPQLSSARFSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYDGLHLHFAYPYFLMSQPQQSHSYPPIKKSKPTSLQAQAQDYRADDVHEAQHTQEAQANATLDMMSATSLDSPQGMAQENLGSQGLLEDMVPFMVRNPANSVNSSHTKFSCSSYRSPPSSPLWTSTYSTSCYTVGLNSST 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1291 314 Pfam WRKY DNA -binding domain 125 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g1291 314 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 15 283 - -
Ssu3g1291 314 ProSiteProfiles WRKY domain profile. 119 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g1291 314 Gene3D WRKY domain 120 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g1291 314 SUPERFAMILY WRKY DNA-binding domain 122 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g1291 314 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 283 IPR044810 GO:0003700
Ssu3g1291 314 SMART WRKY_cls 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1291 Ssu-Chr3 31768326 31771161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1291 11 271 WRKY Transcription Factor Family AT5G43290 40.278 1.65e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g1291 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1291 - - gmx:100810459 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1291 3 31768326 31771161 Ssu3g1291 3 31768326 31771161 ECH