Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1287 ATGAGACCCCAGACCATATGCACCAGCCACGCCATTCACACAAACCCATGTCTCAAACTTGTCATTCTACTCATTTTTCAAACATCCATTGGCATCTGTGAGGCCAAGACGCTCGCTTTGCCACTAAAATCACAAGTGATCCCATCTGGGTATCTCCCGAGACCACCCAACAAGCTTCGGTTCCACCACAACGTGAGCCTCGCGGTCTCCATCACGGTTGGCACGCCGCCACAGAACGTGTCCATGGTCATTGACACAGGAAGCGAGCTCTCGTGGCTCCACTGCAATACGACCCGGGTCACACCCGACCCGTTTTTCAACCCGAATTCCTCGTCCTCCTACAAACCCATCTCGTGCTCTTCGCCCACCTGCACGACTCGAACCCGAGACTTCCCCATACCCGCTTCGTGCGACTCCAACAACCTCTGTCACGCGACTCTCTCCTACGCCGACGCTTCTTCCTCGGAAGGGAACCTCGCTTCCGACACGTTCGGGTTCGGATCCTCCGTTAACCCGGGAATCGTGTTCGGGTGCATGAACTCGTCCTACAGCGCCGACTCCGACTCGGACTCCAACTCAACCGGGTTAATGGGCATGAATCTCGGGTCGCTCTCGTTggtttctcaattaaaaataccCAAATTCTCGTACTGCATATCGGGTTCCGATTTCTCGGGCATTTTACTTCTCGGCCAGTCCAATTTCTCGTGGGGCGGGTCGTTAAATTACACCCCCTTGGTTCAAATATCCACTCCCCTACCTTACTTTGACCGGTCCGCTTACACGGTTCGGCTCGAGGGAATTAGGGTTTCAAATAAGTTACTAAATATTTCGGTAATGTTTTTGTCCCGGACCATACCGGGGCGGGCCAAACCATGTTTGATTTGGGTACCCAGTTTACGTTTTTGCTCAGCCCGGTTTATAACGCATTGA 933 0.522 MRPQTICTSHAIHTNPCLKLVILLIFQTSIGICEAKTLALPLKSQVIPSGYLPRPPNKLRFHHNVSLAVSITVGTPPQNVSMVIDTGSELSWLHCNTTRVTPDPFFNPNSSSSYKPISCSSPTCTTRTRDFPIPASCDSNNLCHATLSYADASSSEGNLASDTFGFGSSVNPGIVFGCMNSSYSADSDSDSNSTGLMGMNLGSLSLVSQLKIPKFSYCISGSDFSGILLLGQSNFSWGGSLNYTPLVQISTPLPYFDRSAYTVRLEGIRVSNKLLNISVMFLSRTIPGRAKPCLIWVPSLRFCSARFITH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1287 310 Gene3D Acid Proteases 62 232 IPR021109 -
Ssu3g1287 310 SUPERFAMILY Acid proteases 68 280 IPR021109 -
Ssu3g1287 310 PANTHER ASPARTYL PROTEASE-RELATED 26 280 IPR001461 GO:0004190|GO:0006508
Ssu3g1287 310 ProSiteProfiles Peptidase family A1 domain profile. 67 310 IPR033121 -
Ssu3g1287 310 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Ssu3g1287 310 Pfam Xylanase inhibitor N-terminal 69 231 IPR032861 -
Ssu3g1287 310 PANTHER ASPARTIC PROTEINASE PCS1 26 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1287 Ssu-Chr3 31547829 31548761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1287 25 210 Miscellaneous Gene Families AT1G44130 27.692 1.02e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1287 3 31547829 31548761 Ssu3g1287 3 31547829 31548761 ECH
Ssu3g1287 3 31547829 31548761 Ssu8g0438 8 7018346 7019494 ECH