Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1286 ATGCCACCACGTATGCTATACCGTGGTCATAGATGGTACAGGAGTTCTCAGCCTATGAGAGACACTGATGACACTAATGTGGCAAGAACATTTAGAGCTCCCCAAGCACCACCCAATGCTTCCACTCGCAAAGAAAGAGAGAGTGTGGCAAGAGAGATGCAAGAAACAATGCTTGCTGTTGAGCTTGAGCCATGGGCAATTGGACCCCTATCCAGCAGGTCCTGTGGACTTGTCTCATTTGAGGTCCTATGCAAACCATATTGCCCTACACATGAAAACAATAGTGTGTGGCTTAGCATGCAGAGAGGTAAGATGAAGCTAGATGAGGATCTGGGTCCTGATCGTGAGGATGATTTCCAAACTGATGATGAAGAGAATCAGGCACATAGGGTGTTTGAACATTTATTGGACGATGATACCGAATCAGACAATTCACCTCCTTCACGAAGTTTGTCCAATGAGGTTTCCATTACCTCTTGGCCTCAAAGCTATAGGCAATCTATGGACATGTTAACTAGTGTAACGCCACCAGGACTTTACTTTCCTAAGGAGAATTGGTTCAGTAGGGAGAGGgacttacataattttgttttctataaagGAACCAATATATTATGTGGGATAGGACTTCTTACCATTCCATATGCAATAAAAGAAGGAGGGTGGCTGAGCCTTATATTACTTCTGATGTTTGCTATGATGTGCTGTTATACTGGGATGTTATTAATAAGATGCTTAGAAAGCCACCCTGGACTCAAAACCTACCCAGATATTGGCCAGGCTGCTTTTGGAATTGCTGGTCGCTTGGGGATTGCGATCTTGTTATACGTGGAACTTTTTGCTTCTTGTGTTGAGTATATAATACTAGTCAGTGATAACCTCTCATCACTGTTTCCTAACACCCACATGAGATTTGGTGGGACTGATTTTGATACTCAAGAAATTTTTGCCATCACAGCAGCTATTCTTGTTCTACCAACGGTTTGGCTGCGAAATCTAAGCCTGCTTTCTTATATTTCAGTTGGAGGAATATTTGCAACGATACTTGTTGCACTCTGCTTGTTTTGGGTTGGGATGATAGACCAAGTTGTTGGTTTTAAGCCAGGAGAAAAAGTTTTAGACTTGGCAAACATATCTGTCTCAgttggtctctatagtttttGCTTTGCTGGCCATGCAGTTTTTCCTAACATCTACTCTTCCATGAAGGAACCATCCAAATTCCCATCAGTGTTATATATCAGCTTTTCCTTTTGTCTTGTTATGTACATGGGCGTGGGAATAATGGGCTATTTAACGTTTGGTGACTCAGTTGCATCTCAGTTTACCTTAAACATGCCCAAAGAATTATATGCATCCGAGATTGCAACCTGGACAACTgttgtgACTCCAGTGGCAAAATATGCCTTAACGTTAATGCCTATTGCATTGAGCATAGAGGAACTCGCCACCTCTCCTAGGCTAAGATGCCATGCTATGTCTGTTCTTGTCAGAACAAGTTTAGTGATTTTAAGTTTACTTGTGGCTCTCTTTATTCCATATTTTGGTTCTTTGATGGCACTAATTGGTTCTTTCATGTCAATACTAGTTGCAATTATTTATCCTTGCGCATGTTTTCTCAAGCTACAAAGTGGCAGATTATCAACTATAGAGATAACAAGTTGCGTTTTGATAATTGTTGTGGGGCTGGTATGCGCTTCTGTTGGAACATATTCAGCTATTTCAAAAATAGCTGGCGAAGGGGACTGA 1749 0.4059 MPPRMLYRGHRWYRSSQPMRDTDDTNVARTFRAPQAPPNASTRKERESVAREMQETMLAVELEPWAIGPLSSRSCGLVSFEVLCKPYCPTHENNSVWLSMQRGKMKLDEDLGPDREDDFQTDDEENQAHRVFEHLLDDDTESDNSPPSRSLSNEVSITSWPQSYRQSMDMLTSVTPPGLYFPKENWFSRERDLHNFVFYKGTNILCGIGLLTIPYAIKEGGWLSLILLLMFAMMCCYTGMLLIRCLESHPGLKTYPDIGQAAFGIAGRLGIAILLYVELFASCVEYIILVSDNLSSLFPNTHMRFGGTDFDTQEIFAITAAILVLPTVWLRNLSLLSYISVGGIFATILVALCLFWVGMIDQVVGFKPGEKVLDLANISVSVGLYSFCFAGHAVFPNIYSSMKEPSKFPSVLYISFSFCLVMYMGVGIMGYLTFGDSVASQFTLNMPKELYASEIATWTTVVTPVAKYALTLMPIALSIEELATSPRLRCHAMSVLVRTSLVILSLLVALFIPYFGSLMALIGSFMSILVAIIYPCACFLKLQSGRLSTIEITSCVLIIVVGLVCASVGTYSAISKIAGEGD 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1286 582 MobiDBLite consensus disorder prediction 135 155 - -
Ssu3g1286 582 PANTHER AMINO ACID TRANSPORTER AVT1D 186 577 - -
Ssu3g1286 582 PANTHER OS05G0424000 PROTEIN-RELATED 186 577 - -
Ssu3g1286 582 Pfam Transmembrane amino acid transporter protein 203 574 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1286 Ssu-Chr3 31527357 31539164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1286 105 580 Amino Acid or Auxin Permease AAAP Family AT3G09340 48.593 4.55e-164 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1286 K15015 - zju:107430514 568.926