Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1282 ATGGGCTCCGGGTTCGACCACTTGCTAGACCGGCTCGACGGAGCCGCCGCGGTCCGGGCTCCGCCGCCCGCGGCGGCCGCGTCGAAGGCGGCGATCGAGTCGATGCCGGCGGTGAAGATCCTCGCGTCGCACGCGGAGTCCCGCTGCGCGGTGTGCATGGAGCACTTCGAACCGGACTGCGACGCACGTGCGATGCCGTGCGGGCACGTGTACCACTCCGAGTGCATCGTGCCGTGGCTCTCCGTGCGGAACTCGTGCCCCGTGTGCCGGCGCGAGGTGCCCGCCGACGACGATAACGGCGCGGTGGGGTTGACCGTGTGGAGACTCCCCGGGGGGGGATTCGCTGTGGGCAGGTTCATCGGAGGCAGGGAGCTCCCGCTCGTGTACACGGAGATGGACGGCGGGTTTAACGGCGCTAACGGCGTTCCCAGGAGGGTCACGTGGGACTCCTCCGTCGGGAGGAATAGGGAGGGCAGGGGGTTCGGTCGTGCCTTGAGGAATATCGTCTCGTATTTTAGGAGCTCGTTTTCTCGCGGGACGAGAAATTTGGGTTTGAGTGGAAGGTCTCGCTCTACCTCGACGATTTTTTATAGGTTCGGGAGCTCCTAG 609 0.6585 MGSGFDHLLDRLDGAAAVRAPPPAAAASKAAIESMPAVKILASHAESRCAVCMEHFEPDCDARAMPCGHVYHSECIVPWLSVRNSCPVCRREVPADDDNGAVGLTVWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGVPRRVTWDSSVGRNREGRGFGRALRNIVSYFRSSFSRGTRNLGLSGRSRSTSTIFYRFGSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1282 202 ProSiteProfiles Zinc finger RING-type profile. 49 90 IPR001841 -
Ssu3g1282 202 Pfam Ring finger domain 48 90 IPR001841 -
Ssu3g1282 202 SMART ring_2 49 89 IPR001841 -
Ssu3g1282 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 96 IPR013083 -
Ssu3g1282 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 1 157 - -
Ssu3g1282 202 Pfam Protein of unknown function (DUF1117) 102 182 IPR010543 -
Ssu3g1282 202 SUPERFAMILY RING/U-box 33 106 - -
Ssu3g1282 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1282 Ssu-Chr3 31489997 31490605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1282 4 103 C3H Transcription Factor Family AT5G01980 42.718 1.35e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1282 - - gmx:121172634 295.434