Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1281 ATGTCGTTGAACCGCGAAGAAGATGAGCTCTACGAGCAACTATGGAAGGCGTGTGCGGGACCCCATGTGGAAGTTCCTCGTGCAGGCCAAAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAAAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCGCTCCAAGATCCTTTGTCGGGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAATCTAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTGCTGAACTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACCAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCATTGgACATGTCTCAATCAACCCCAACTCAGGAATTGGTTGCCAGGGATCTTCATGGCTATGAATGGCGCTTTAAGCATatatttagagGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTGCGGGTTGGAGTGAGGCAAGTTGCTCCTGTGCAGAGCAGCATGCCTTCATCTGTGATTTCTAGTCAAAGCATGCACCTAGGAGTTCTTGCTACTGCATCTCATGCTGTTGCAACTCAGActctttttgttgtatattataAGCCAAGGACAAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGGCTGTCAACCAAAAATGCAATGTTGGTATGAGATTCAAGACGAGGTTCGAAGGGGATGATTCCACTGAAACTGACAAAAGATTTTCGGGCACAATAGTTGGAATAGAGGATATTTCCCCTCACTGGGTAAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACATGCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAAGCCGTTCTGCCTTCTGTTCCTATGCCATCATCTCAACCTGCTGTTGTAAAGAATAAAAGGCCTCGACCAGCAAGTGAAGTTCCAGATCTTGGAGACACACCATTAGCTGCCTCTACTTTCTGGGATGCTGGGCTTACACAGTCTGATATGACACAACTTAGTGTCATGGCCGAAAGCAAAAGGAGTGACATTAGTACCCATGTGTGGCATCATAACAGTAAAAGCAGCAGCAATGGTATATCAATGAATCAGACAGTAGCAAGTTGGCTATCTTTTCCTCATTCTACTGGTCCTTCTCACTTATATCACGACACAACCAATGATAGCAAGAGCATCTCAGCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAACAATGATCATTTGCTTGACCAGGTTGACAAGGAGATCAACAAAGTAGAGGCTGCTACTAGCTGTAGATTGTTTGGGATTGAGCTTATTGACCATGCCAGGAACAACTCTCTTTCTGTACAGAATGCAACAGTGCATGCAACAAATGCTTTCGGTGTCACCTCTGAGTACAGAAGTGATGTAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTAGAAGGGTCCCCAAAAGAGACTCAAAGCAAGCAAGTTTGTAGTAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACGTTGGATGGATATTATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGCGCACAAATTGAGCTCAGGGAGCAAAATACCTATCTCATCTATAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACCTGA 2019 0.4403 MSLNREEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLKVSTNQELNQRIPLFKLRSKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTCPDPCPAELPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQSTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRQVAPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAVNQKCNVGMRFKTRFEGDDSTETDKRFSGTIVGIEDISPHWVNSKWRSLKVQWDEHASFPRPDRVSPWEIEAVLPSVPMPSSQPAVVKNKRPRPASEVPDLGDTPLAASTFWDAGLTQSDMTQLSVMAESKRSDISTHVWHHNSKSSSNGISMNQTVASWLSFPHSTGPSHLYHDTTNDSKSISAWPISKTHSERLNNDHLLDQVDKEINKVEAATSCRLFGIELIDHARNNSLSVQNATVHATNAFGVTSEYRSDVNHESDISKASKEWKQEQLEGSPKETQSKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYYQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDAHKLSSGSKIPISSIEETVISSDTAET 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1281 672 Pfam AUX/IAA family 490 598 IPR033389 -
Ssu3g1281 672 Pfam AUX/IAA family 605 649 IPR033389 -
Ssu3g1281 672 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
Ssu3g1281 672 CDD B3_DNA 113 214 IPR003340 GO:0003677
Ssu3g1281 672 ProSiteProfiles PB1 domain profile. 562 643 IPR000270 GO:0005515
Ssu3g1281 672 SUPERFAMILY CAD & PB1 domains 565 638 - -
Ssu3g1281 672 MobiDBLite consensus disorder prediction 352 374 - -
Ssu3g1281 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu3g1281 672 Gene3D - 276 348 - -
Ssu3g1281 672 PANTHER AUXIN RESPONSE FACTOR 4 661 - -
Ssu3g1281 672 Gene3D - 558 650 - -
Ssu3g1281 672 SMART B3_2 115 217 IPR003340 GO:0003677
Ssu3g1281 672 Gene3D - 112 216 IPR015300 -
Ssu3g1281 672 Pfam Auxin response factor 241 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu3g1281 672 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Ssu3g1281 672 SUPERFAMILY DNA-binding pseudobarrel domain 106 244 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1281 Ssu-Chr3 31411815 31416927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1281 4 655 B3 DNA Binding Superfamily AT4G23980 57.855 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu3g1281 AUX_IAA 2e-07 CL0072