Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1273 ATGGCCACCCTTTTGAAATTCTTGTCTCTTTTGGTGTTCCTTTTGATCCCAGTTTCTTCCCAGGTTGACCAGCTTCTGTATGCTGGATTCAAGGATGTGGGTGCCAGCAACCTAACCTTGAATGGGGTCGCtgagatagagaaaaatggAATACTCAAGTTGACAAATGAGACCAGCAGGTTAATGGGTCATGCTTTTTACCCATCACCTTTTCAGCTGAAAAACTCCACAACTGGTAaagttttctccttttcttcctcATTTGCTCTGGCTATTGTCCCTGAGTACCCCAAGCTAGGTGGCCATGGCTTGGCTTTCGCAATAGCAACTTCCAAGGATCTCAAGGCTCTACCTAGCCAGTACCTTGGTCTCCTTAATTCCAGGGATAATGGTAACTTCTCCAACCACATCTTTGCTGTTGAGTTTGACACTGTGCAAGACTTTGAGTTTGGGGACATTAATGACAACCATGTTGGAATAGACATCAATAGTATGCAGTCCAATGCATCTGCTAACGTTAGTTTAGAGGGTCTCAATCTCAAAGGTGGGAAACCAATTCTAGCTTGGGTTGATTATGATTCTGAATCGACTCTTGTCAATGTTACACTTTCTCCAAATTCATCCAAACCCAAAAGTCCAATCTTGTCCTTTAATGTGGATCTTTCACCCATTCTTCATGATACTATGTATGTTGGGTTCTCTGCATCAACCGGTTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTCCCAAAACTTCCACAGCCAAAGAAGAAACAAACTTCTCTGATAACTGGGGTTTCAGTCTCGGTTGCTGTTATGGTGTTATTAGCCATCTCCATTGGCATTTACTTGTTCAGAAAAATCAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAGATTGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACCAGAGGTTTCAAGGACAAAGAGCTTCTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAATTCCAAGATCGAAGTAGCCGTTAAGCGAGTTTCGCACGAATCAAAGCAAGGCCTGAGGGAATTTGTGTCGGAGATCGCTAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAATTACTCGGCTGGTGTCGCCGCCGGGGCGACCTCCTGCTTGTGTATGATTTCATGGCCAATGGGAGCTTGGACAAGTACTTGTTTGATGAGCCAAAGATTGTCCTGAGTTGGGAGCAGAGGTTCAAGATCATAAAGGGTGTTGCTTCAGCTCTTTTGTATTTACATGAAGGCTATGAGCAAGTGGTGGTACATAGAGATGTGAAGGCCAGCAATGTGCTGCTAGATTATGAGCTTAATGGAAGACTAGGTGATTTTGGGTTGGCAAGGTTGTATGAACATGGGGCTAACCCAAGCACCACAAGAGTGGTGGGTACATTAGGCTATTTGGCACCTGAGTTGCCTAGAACAGGAAAGGCAACTACAAGCTCTGATGTTTTTGCATTTGGGGCACTTTTGCTTGAGGTGGCTTGTGGGCGCAGGCCAATTGAGCCTAAGGCATTGCCTGAAGAGTTGGTTTTGGTGGATTGGGTGTGGGAGAAGTACAAAGAAGGGAGAATACTTGGTGTGGTGGACCCAAAACTAAATGgcaaatttgatgaaaaagagGTGTTGGTGGTGTTGAAATTGGGGTTGTTGTGCTCAAATGATGTGCCTGCTACTAGGCCTAGCATGAGGCAAGTGGTGAGGTACTTGGATGGGGAAGTTGAGGTGCCAGGGGACTTGAGAAAGCCAGGAGATTTAAGTCACCCAGAGGGGTTTGATGAGTTTTTGCACTCACTTGCATCCTCTTCCTTTGATAAGATGAGCTCAAGCTCCAATTTTGGAAATAGAGACATGGATACTAGTTTTCTTTCCCTTGGTAATTCACCTCATTCCCTTCTCCATGGTAGAGGGGAAACGAGGTGA 2025 0.4454 MATLLKFLSLLVFLLIPVSSQVDQLLYAGFKDVGASNLTLNGVAEIEKNGILKLTNETSRLMGHAFYPSPFQLKNSTTGKVFSFSSSFALAIVPEYPKLGGHGLAFAIATSKDLKALPSQYLGLLNSRDNGNFSNHIFAVEFDTVQDFEFGDINDNHVGIDINSMQSNASANVSLEGLNLKGGKPILAWVDYDSESTLVNVTLSPNSSKPKSPILSFNVDLSPILHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPKLPQPKKKQTSLITGVSVSVAVMVLLAISIGIYLFRKIKNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLSWEQRFKIIKGVASALLYLHEGYEQVVVHRDVKASNVLLDYELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWEKYKEGRILGVVDPKLNGKFDEKEVLVVLKLGLLCSNDVPATRPSMRQVVRYLDGEVEVPGDLRKPGDLSHPEGFDEFLHSLASSSFDKMSSSSNFGNRDMDTSFLSLGNSPHSLLHGRGETR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1273 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 273 IPR013320 -
Ssu3g1273 674 PANTHER - 4 659 - -
Ssu3g1273 674 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1273 674 Pfam Legume lectin domain 25 266 IPR001220 GO:0030246
Ssu3g1273 674 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Ssu3g1273 674 SUPERFAMILY Protein kinase-like (PK-like) 316 619 IPR011009 -
Ssu3g1273 674 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 4 659 - -
Ssu3g1273 674 CDD STKc_IRAK 340 606 - -
Ssu3g1273 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Ssu3g1273 674 Gene3D - 24 254 - -
Ssu3g1273 674 CDD lectin_legume_LecRK_Arcelin_ConA 24 255 IPR001220 GO:0030246
Ssu3g1273 674 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1273 674 Gene3D Transferase(Phosphotransferase) domain 1 411 615 - -
Ssu3g1273 674 Pfam Protein kinase domain 334 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1273 674 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1273 Ssu-Chr3 31300183 31302207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1273 18 645 Receptor kinase-like Gene Family AT3G55550 61.059 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu3g1273 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1273 - - gmx:100784346 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1273 3 31300183 31302207 Ssu6g2937 6 67702088 67704091 ECH
Ssu3g1273 3 31300183 31302207 Ssu4g2189 4 50707530 50709590 ECH
Ssu3g1273 3 31300183 31302207 Ssu3g1273 3 31300183 31302207 ECH