Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1269 ATGTGGAGTAAGAGAAAGTACTTTATGAGATCTAGTCTTGATTCACCTACTGATTGCCCCTCCTCCTATGATGACCACTCATGGGAAGAACAAGCCTTTGCAAAAGACGCAGCTTGGTCTGGTTGCATATGGCCACCACGATCATATTCTTGTAGCTTTTGCAGAAGGGAATTTAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAACAGCCATATAGCCCCCAGAATGAAATCCTTAGTGATGACCTTGAGAAAAGTCAACCCCAGAATTCAGTGCAGAGAGAAACCCCTGATTCCACTTtacaattcaattttcaaaggATGCTCAATCCTGAAGCTGGTGTTGAGAAAACTTTGAAGGGATTGGATTCTGGGTGTAGAAGTGAGGGTGATACTGACAAAACTCATATGGCTGTGAGCTTTAACTTGTTTATGAGTCGAGCTCACCTACATGTGCAGTTTGAGACTAAAGAGACAAATACAAATTTCAAGAAGAGGAAAGCATATGCTTCATCCATTCCATTCTTCCCAAAGTCATGCTCAGTTGATAGGCATCATGTCCAGTCACAGATGTTTGAATTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGATACAGGTCCAAGGTATAG 675 0.4163 MWSKRKYFMRSSLDSPTDCPSSYDDHSWEEQAFAKDAAWSGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILSDDLEKSQPQNSVQRETPDSTLQFNFQRMLNPEAGVEKTLKGLDSGCRSEGDTDKTHMAVSFNLFMSRAHLHVQFETKETNTNFKKRKAYASSIPFFPKSCSVDRHHVQSQMFEFSPSSIEELDLELRLGYRSKV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1269 224 SUPERFAMILY beta-beta-alpha zinc fingers 46 76 IPR036236 -
Ssu3g1269 224 PANTHER CHAIN A, NMR STRUCTURE OF THE SINGLE QALGGH ZINC FINGER DOMAIN FROM ARABIDOPSIS THALIANA SUPERMAN PROTEIN 15 223 - -
Ssu3g1269 224 SMART c2h2final6 49 71 IPR013087 -
Ssu3g1269 224 MobiDBLite consensus disorder prediction 83 109 - -
Ssu3g1269 224 Pfam C2H2-type zinc finger 49 73 - -
Ssu3g1269 224 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Ssu3g1269 224 Gene3D Classic Zinc Finger 45 110 - -
Ssu3g1269 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Ssu3g1269 224 MobiDBLite consensus disorder prediction 71 109 - -
Ssu3g1269 224 PANTHER OS07G0101800 PROTEIN 15 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1269 Ssu-Chr3 31084638 31085388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1269 27 80 C2H2 Transcription Factor Family AT2G37740 83.333 3.22e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g1269 zf-C2H2_6 8.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1269 - - gsj:114396020 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1269 3 31084638 31085388 Ssu4g2197 4 51102498 51105704 ECH
Ssu3g1269 3 31084638 31085388 Ssu3g1269 3 31084638 31085388 ECH