Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1262 ATGGAAGCCACTTCTATAACGCAGTTGTTGAAGGGCTTTTGTGATCACACACAATGGAAATATGCTGTTTTTTGGAAGCTTGGCCACCATTTTCCTATGACTTTGACCTGGGAAAATGGTTACCAGAAAAGAAATGAGGTTGAGGAAAGTATGTGGGGTGACATCAATTTCAAATCCCCAGATGAGTTATATTCTTCAACCGGTGAAAGTACTGATTATTCAGGAGATTATTCAGCGCGACAACTCATGATTGAAATGTCTCAACGTCAATACAGTTTGGGAGAAGGGGTTGTTGGCAAAATAGCTCTTGCCAGGAATCATTGTTGGCTTTCCTGTGAGGATATTCTCACCAGTAAATGTGACACTGATTTAATCCCTGAGTGTCCTGATGAGTGGCTTCTTCAATTTGCATGTGGCATCAAGACTATTGTGCTGGTACCAGTTCTTCCGCTAGGGGTTTTGCAGTTCGGTTCATTTGAAGCGGTTGCTGAAGACCTGGAATTTGTTACCAATATCAAGGAGAAATTCCACTCCTTTCATTGTCTGGAAGCAAATACTACACCTTTAAACTTGGTAACTGATTATCAAGATTATTCATTCTCAGACTTAATGCATAATTTGATGGATAGCTTGGACGAATCATCTTCTGTTacaaaaagtattttgaaaagtgAATTTTCGACTAGTACTGCTGCACTCAATGCAAACGGTTCAACAAGGTTGAACCCAACAGTGCTATCATTTATTCAGGATGACTGTTGCTTGTCTAGAGAAAATCTACTTAAATCTTTGAAAAGagcaaatgaaaatgaaataggtTCCTCATCAATTGAGATGTCAACTGTTCCAAGACATATTGGTAAGGTGGAGACAAAACCAAATCATATGGAAGAAGAGATATGGTCTTGGTCTCACTTGGTCAACAATGTGGGAGTCTTCGGAGAGATGTCAAATGGATTAGACTcgttctcttttaaaaatacaacACAGAAACAACTTGGAGGCACTGAAATTGGTCTTGATAATGTTAAGAATGTGAATGACTTCATGTTTCCCTCAGAGTCTGAATTGCACAAAGCACTTGGATCAGTTGCATATGGAGAGACAGGCAAATCtatgtcaaaatttatttctGTTGAGGAAATATACAGTAGCTCAACTCTTGTAACCAACAAAAAAGAGCATGATCATATTAAAGGTTTGGAGTTTCCCAAAGATGTTGATCTGGAATATCTTTTAGATGCTGTTGGCAATTTATGCGGTGCCACTGATGATACTTTCAGTATATCCAAGAATGTCACGTCTCTTACAACCATGCCAACAGAGTTTACTGGTTCCATTCAGCCAAAAAATAATTCAGAAGAAAGCACTTTGATTGTGGATAATTCAGATGTGAAAAATGATATTATGCCTGCTGTTATGGTCAAGGGCAAAGATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGCGAGCTTGTTGATTGACGAGGTTATACCGGAAAAGGCTAATAGTCATATGCAGCCTATTAGTGGACCAAAGCTCTCTAGCACAAGCAAGACAAAAACAAGAGTTGGTAACAACCAAAAGTCAAGGCCAAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGAGAACTTGTCCCAGATGGTGGTAGGTGTAGCATTGACAACCTCTTGGAACGGACCATAAAGCACATGCTGTACTTGAGAAAGATAACAAGCCAGGCTGAGAAACTGAAACGATTTGCCAATCGGGCGGTTCCTGAGTGTAAAAGACAGAAGATCAATGGTAGCCAGCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAACTAGCATGGCCTATAGTCATAGAAGATCTGGAATGCTCAGGGCACATGCTCATAGAGATGATATGCAATGAGCATGGACTTTTCTTGGAGATTGCTCAGGTGATCCGAAAGCTGGATATTACCATCTTGAAAGGGATCTTGGAAAACCGTTCTAGCAACAGCTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGCTTTCACAGAATGGATGTTTTATGTCCTTTACTGCATCTTCTGCAGCTTAGGAGAAACCCTATCTCGTATAAAAGCTGA 2121 0.3899 MEATSITQLLKGFCDHTQWKYAVFWKLGHHFPMTLTWENGYQKRNEVEESMWGDINFKSPDELYSSTGESTDYSGDYSARQLMIEMSQRQYSLGEGVVGKIALARNHCWLSCEDILTSKCDTDLIPECPDEWLLQFACGIKTIVLVPVLPLGVLQFGSFEAVAEDLEFVTNIKEKFHSFHCLEANTTPLNLVTDYQDYSFSDLMHNLMDSLDESSSVTKSILKSEFSTSTAALNANGSTRLNPTVLSFIQDDCCLSRENLLKSLKRANENEIGSSSIEMSTVPRHIGKVETKPNHMEEEIWSWSHLVNNVGVFGEMSNGLDSFSFKNTTQKQLGGTEIGLDNVKNVNDFMFPSESELHKALGSVAYGETGKSMSKFISVEEIYSSSTLVTNKKEHDHIKGLEFPKDVDLEYLLDAVGNLCGATDDTFSISKNVTSLTTMPTEFTGSIQPKNNSEESTLIVDNSDVKNDIMPAVMVKGKDEFSNHFTSSFDGNASLLIDEVIPEKANSHMQPISGPKLSSTSKTKTRVGNNQKSRPRDRQLIMDRMKELRELVPDGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRFANRAVPECKRQKINGSQPGRSCAFDFESELAWPIVIEDLECSGHMLIEMICNEHGLFLEIAQVIRKLDITILKGILENRSSNSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPISYKS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1262 706 MobiDBLite consensus disorder prediction 505 538 - -
Ssu3g1262 706 MobiDBLite consensus disorder prediction 511 528 - -
Ssu3g1262 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 525 574 IPR011598 GO:0046983
Ssu3g1262 706 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 176 IPR025610 -
Ssu3g1262 706 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1 1 705 - -
Ssu3g1262 706 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 705 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1262 Ssu-Chr3 30858923 30863375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1262 355 700 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 36.364 3.65e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1262 - - gmx:100820605 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1262 3 30858923 30863375 Ssu3g1262 3 30858923 30863375 ECH