LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g1243	ATGGAACCCAACCATACATGCCCTCCAGTTATATCTTTCCAATCGTTTACACTTACAATTCACCTTTCTCTCCCAAAAGGcgtagcggtggtggtggtggtggtggtggtgcgtTTTGACCACCATGTTTTCCCTCACATCCCTCCTCCTCTGCAGCAAACATTGCAACGGCAGGAACACCGACGGCGGTGGAGGGAACCCAACGTCGTGGGCGACGGTGCCTTTCAACTGAAGGAAGAACTTCAGCACCGCTCCATAGTGGAATCGTTACCCGTTTTCAAATTCGGAGCATTGTGCAACCAAAAGGACGGGCTCAATCGCGCGATTTGCCTCACCAAGTTCGAAGTCGCAGAGGCTCTCCGACCATTGCCGAAATGCAAACTATGGCTCGGTTGTGAAATGGAGGTTCTAGAGGAAGAGGGCAGCGACGACGACGAGGAAGACAATGATTTGGCAGACGAAGGCTTAGCTGTCGAAGGTGAAGACATTGTCATCGTTGTGCGATCAAGCGAGGGCAATAATGTGTGTAAAACCCCATGTGATCAAGCGAGGGTGAAGAAGAATTGCGTCTGCTTTCTTTGTTCACACAGAAGGGAACTCAAGAATAGTGTTCTCGATGGAACTGTGTTTTTTGCTTCCTTTGTTCACATGGGAAAAGAGAACCAAAGAATAGTGGGTGggtacttttga	690	0.4565	MEPNHTCPPVISFQSFTLTIHLSLPKGVAVVVVVVVVRFDHHVFPHIPPPLQQTLQRQEHRRRWREPNVVGDGAFQLKEELQHRSIVESLPVFKFGALCNQKDGLNRAICLTKFEVAEALRPLPKCKLWLGCEMEVLEEEGSDDDEEDNDLADEGLAVEGEDIVIVVRSSEGNNVCKTPCDQARVKKNCVCFLCSHRRELKNSVLDGTVFFASFVHMGKENQRIVGGYF	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g1243	229	PANTHER	RING-H2 FINGER PROTEIN ATL43	83	127	-	-
	Ssu3g1243	229	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	83	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g1243	Ssu-Chr3	30300122	30302952	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g1243	84	127	C3H Transcription Factor Family	AT5G05810	65.909	1.20e-12	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g1243	-		K19041	gmx:100794083	68.5514