Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1241 ATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTAAGAGTCTTTGCTCAGAACCAACCTGGTTTCGTTGAATCTCCCTCTACCCTTCACCCCTCTTGTCCAACTTTACCCTCTCTCTACGATCCTTCGCTTATTCCCTCTGATTTGTTAGCCTGTGCCACCCAACAAGGTCACGGGGCGAAGGAAGAAGGTTCTAATTTGATGATGGGGTTTGCGGAAGGAGGGGATGTGAATGGCGAGGCAATTCAAGTTATTAACAGTGGTAGCAACAGCAACAACCCTTTTCTCTACCAGCTTCAGAACCTTAGGGAATTTGGTGATAGCTACAATGATGGGAGTGAAATGATGATGTTCCAGCCTGAGCCTTTGTCTTTGTCTTTATCTTCCCGCGGTAACAACACTCATCACCCCTTGGAACTGAATCTTCAGCGATATGGGGGTGTTCTTTACGGTGATaagggtggtggtggttgtgtgATTCCGGGTTTGGTTGGAGGGAACTGTGAGGTTTCGAGGAGTTCAGTTCCACTTGGACCGTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAGCCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGGGTTCGTGGAATTTACGCTACCGAGAAGATTATTGCTCCTGATGCATCGTTGATGGAACCTCCTCACGAGGGTTTAAGTGCTGGTGGAGTTGGTGGGGATGATCCACTTGGGGAGTATGGGAATGAGGGTAGAAAAAAGAAGTGTAGGCTATTGACCATGCTTGACGAgGTTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTAATAACTTCATTTGAGTATGTTGCTGGCCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAACACTATTACTGACCAGCTTCAGTTCATCAACAAGGCTCATTTTCAGATAAGCAACAGGAAGGATGAATCTCCAAGGTTTCACAACAGTGATAGGGGTACGTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAGCAACCAGTTTGGCGACCTCAAAGAGGACTTCCTGAGCGTGCCGTGAGCGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTGCACCCTTATCCTACTGATACCGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCACGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTTAGGCTTTGGAAACCAATGGTGGAAGAAATACATACGCTAGAATCACAGCAAGCTCAAAAAAGGCCGCAGAGGGAAGAACAAAGTAGGAAAAACTTAAGTGATCATTTACCTTCTGATAACTCTCTTGTTACCGAGAATCCATCTACCTCCATGGAGAAGTTTCATAATGCCCCACATAAAAGCACTAGAAATGAACTTGCTAACATGCAAGTGAGGAATCTAGAACAGCTGAATCAGAGTAACACAAGCAATCAGCAAGTGGGTGTTGGAGTGAGCATGGGGAGTGGTGGTGGGGCAAGCAATAATGGTGTCTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGGTTGTCTGAGCCCTTTAGCATGAGTGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1767 0.4482 MAEGFEHYHVPQQSRRDKLRVFAQNQPGFVESPSTLHPSCPTLPSLYDPSLIPSDLLACATQQGHGAKEEGSNLMMGFAEGGDVNGEAIQVINSGSNSNNPFLYQLQNLREFGDSYNDGSEMMMFQPEPLSLSLSSRGNNTHHPLELNLQRYGGVLYGDKGGGGCVIPGLVGGNCEVSRSSVPLGPFTGYASILKGSRFLKPAQQLLEELCDVGVRGIYATEKIIAPDASLMEPPHEGLSAGGVGGDDPLGEYGNEGRKKKCRLLTMLDEVYRRYRQYYQQMHAVITSFEYVAGLGNAAPYASLAINAMSKHFRCLKNTITDQLQFINKAHFQISNRKDESPRFHNSDRGTYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHTLESQQAQKRPQREEQSRKNLSDHLPSDNSLVTENPSTSMEKFHNAPHKSTRNELANMQVRNLEQLNQSNTSNQQVGVGVSMGSGGGASNNGVSLTLGLHQNHGIGLSEPFSMSAAQRFGVALQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1241 588 MobiDBLite consensus disorder prediction 434 482 - -
Ssu3g1241 588 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Ssu3g1241 588 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 564 - -
Ssu3g1241 588 Pfam Associated with HOX 193 321 IPR006563 -
Ssu3g1241 588 CDD homeodomain 366 427 IPR001356 GO:0003677
Ssu3g1241 588 SUPERFAMILY Homeodomain-like 368 432 IPR009057 -
Ssu3g1241 588 MobiDBLite consensus disorder prediction 455 482 - -
Ssu3g1241 588 Gene3D - 369 431 - -
Ssu3g1241 588 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 84 564 - -
Ssu3g1241 588 SMART prehox3 188 322 IPR006563 -
Ssu3g1241 588 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Ssu3g1241 588 SMART HOX_1 366 430 IPR001356 GO:0003677
Ssu3g1241 588 MobiDBLite consensus disorder prediction 434 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1241 Ssu-Chr3 30279619 30286374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1241 1 588 Homeobox Transcription Factor Family AT5G02030 46.166 7.64e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu3g1241 POX 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1241 - - vun:114185080 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1241 3 30279619 30286374 Ssu3g1241 3 30279619 30286374 ECH