Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1227 ATGACTTCAAGTCAGGAAGATGTGACGCTTTTGGGAGTTTTGGCGAGCCCATTTGTGTGCAGGGTGAAGATTGCCCTCAAGTTGAAGGGAGTTGAATACAAATATGTGGAAGAAAATTTGGCGGATAAGAGTGATCTGCTCCTCAAATCCAACCCAGTTTACAAGAAGGTTCCAGTGTTTGTTCACAACGAGAAACCCATACCAGAGTCCCTTGTGATTGTTGAGTACATTGATGAGACATGGAAACACAACCCCATCTTGCCGTCTGAACCTTACCGACGTGCCTCGGCTCGTTTCTGGTCCAAGTTCATAGATGACAAGGTTGTGGGTGCTGCATGGAAAGCTGTTTTCACCGTTGATGAGAAAGAGCGTGAGAATAATGTTACAGAAACATTTGAGGCTCTGCAGTTTCTTGAGAATGAGCTCAAGGACCACAAGTTCTTTGGAGGAAAGGAGGTTGGGTTGGTAGATATTGCTGCTGTCTTCATAGCATTTTGGATCCCTATGTTTCAAGAAGTAGCGGGATTGGAGTTATTCACCAGTGAGAAATTTCCTAAGCTCTACAAGTGGAGCCAAGAATTCATCAACCATCCAGTTGTGAAAGAAAGTCTGCCCCCTAGAGACCCAGTTTTTGGCTCTTTCAAAGGACGCTATGAAAGCCTTACTGCTTCAAAATAG 678 0.4454 MTSSQEDVTLLGVLASPFVCRVKIALKLKGVEYKYVEENLADKSDLLLKSNPVYKKVPVFVHNEKPIPESLVIVEYIDETWKHNPILPSEPYRRASARFWSKFIDDKVVGAAWKAVFTVDEKERENNVTETFEALQFLENELKDHKFFGGKEVGLVDIAAVFIAFWIPMFQEVAGLELFTSEKFPKLYKWSQEFINHPVVKESLPPRDPVFGSFKGRYESLTASK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1227 225 CDD GST_N_Tau 8 81 - -
Ssu3g1227 225 Gene3D Glutaredoxin 1 89 - -
Ssu3g1227 225 CDD GST_C_Tau 91 217 IPR045074 GO:0004364|GO:0006749
Ssu3g1227 225 SUPERFAMILY GST C-terminal domain-like 79 219 IPR036282 -
Ssu3g1227 225 Pfam Glutathione S-transferase, C-terminal domain 115 198 IPR004046 -
Ssu3g1227 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 221 IPR045073 -
Ssu3g1227 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 224 IPR010987 -
Ssu3g1227 225 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 1 221 - -
Ssu3g1227 225 Gene3D - 90 225 - -
Ssu3g1227 225 SFLD Glutathione Transferase (cytosolic) 5 223 IPR040079 -
Ssu3g1227 225 SUPERFAMILY Thioredoxin-like 7 108 IPR036249 -
Ssu3g1227 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Ssu3g1227 225 SFLD Main.3: Omega- and Tau-like 5 223 IPR045073 -
Ssu3g1227 225 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1227 Ssu-Chr3 29842798 29844332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1227 3 224 Glutathione S-transferase Gene Family AT3G09270 49.107 1.44e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1227 K00799 - gmx:100500052 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1227 3 29842798 29844332 Ssu3g1227 3 29842798 29844332 ECH