Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1220 ATGGGTGGTGTTGCAtggacagaagaagaagatcACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTACTGGCTGGAAGGCTACCAGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGCAAAAAACTAAATGCTCTAGAAGCTGAAGATAGGCAAGTAACTAGAGATGTTCAAGTCATTAGGCCCCGGCCTGGAAAAATTGGTTCAAGCTCGGTGAAAAGAAGGGATCAGGGTGAGTCTCCAACTGACAACGGAGTTCAACAAGAGAGTAGCATGTCCTCACTGACATTTGATGCTGATGGACAGAACCACATGCTTGAAACACAGCAAGACAACATATATGCATGCTTGGACCAACAGGGCATTGTTGGTGAGTTGTCAATGGACTTTCAGTTAGAAGGATTTGGAGCAATGATGAATGGGGAGGATAGTAGTAGCAGCCAATGGGATTGGGGTGATTTGCTCTTAGACATGGATTTTTATAAGTGA 528 0.4205 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGRLPGRTANDVKNYWNCHLSKKLNALEAEDRQVTRDVQVIRPRPGKIGSSSVKRRDQGESPTDNGVQQESSMSSLTFDADGQNHMLETQQDNIYACLDQQGIVGELSMDFQLEGFGAMMNGEDSSSSQWDWGDLLLDMDFYK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1220 175 CDD SANT 5 52 IPR001005 -
Ssu3g1220 175 MobiDBLite consensus disorder prediction 74 105 - -
Ssu3g1220 175 Pfam Myb-like DNA-binding domain 5 49 IPR001005 -
Ssu3g1220 175 PANTHER MYB TRANSCRIPTION FACTOR 31 174 - -
Ssu3g1220 175 PANTHER MYB TRANSCRIPTION FACTOR 5 34 - -
Ssu3g1220 175 Gene3D - 5 73 - -
Ssu3g1220 175 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Ssu3g1220 175 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 31 174 - -
Ssu3g1220 175 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 34 - -
Ssu3g1220 175 ProSiteProfiles Myb-like domain profile. 6 52 IPR001005 -
Ssu3g1220 175 SMART sant 2 54 IPR001005 -
Ssu3g1220 175 SUPERFAMILY Homeodomain-like 4 57 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1220 Ssu-Chr3 29698317 29699787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1220 5 77 MYB Transcription Factor Family AT1G66370 34.586 1.59e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g1220 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1220 K09422 - gmx:100798101 284.263