Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1219 ATGTATATGCCTAATGGCCAAGACATGTCGATGTCTAATGGCACAAACAATATGATGATGCACATGCAGATGAGCTTCTATTGGGGCAAAGATGCCACGGTGCTTTTCTCTGGGTGGCCTAACCACAATGTTGGCATGTACATCTTAGccatattttttgtgtttttcttagcCATGGCCACTGAGGTCTTGTCTAACCAGCCACTCGTCAAGCCTGGGACTAGTCCCCTTGTGGGAGGGCTTGTTCAAGCTAGTGTCCACTTATTTCGTGTGGGCTTCACTTACCTGGTGATGCTTGCTGTCATGTCCTTCAACGTGGGAATCTTCATAGCTGCCGTGGTTGGCCACTCCTTGGGATTCTTCGTCGCCAAGTCTCGCGCTCTTGCCATCGCCAATAGGGAAGAAGACAAAGGGTCTTCCTCCATCACAAACAATGTTTGA 441 0.4671 MYMPNGQDMSMSNGTNNMMMHMQMSFYWGKDATVLFSGWPNHNVGMYILAIFFVFFLAMATEVLSNQPLVKPGTSPLVGGLVQASVHLFRVGFTYLVMLAVMSFNVGIFIAAVVGHSLGFFVAKSRALAIANREEDKGSSSITNNV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1219 146 Pfam Ctr copper transporter family 24 65 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g1219 146 Pfam Ctr copper transporter family 77 122 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g1219 146 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 141 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g1219 146 PANTHER CTR FAMILY COPPER TRANSPORTER 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1219 Ssu-Chr3 29688842 29689282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1219 25 142 Inorganic Solute Cotransporters AT5G59030 43.802 2.38e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1219 K14686 - gmx:100527849 219.55