Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1215 ATGCTACCAACGGCCACCGCGGACGGTGTTCCGGCGCCGTACAACTCGACGGTGGCGACGCAGCTGGGGCGGCGGCGGATTCCGATACACACGACGTTCTACTGGGACCACAAGGTGGACATACTATTCCGGTGTTGGCCCGGCGACAGCGCCGCCATGTACGCGGTGGCGCTGCTCCTCGTATTTGCCATGGCGGTGTTGGTGGAGTGGCTTTCGTTCACCAACATCGTGAAGCTCAAGCCCGGGGCCTCGAACGACGTCGTTGGGGGCCTCCTCAAGACTGGGCTATACGGCGTGCGTTCCGCACTCTCTTACTTGGTGATGCTGGCAGTCATGTCGTTTAATGGCGGCGTGTTTGTCGTCGCAATTGGTGGCCACGTCATTGGGTTCTTGATTTTCGGGACGCGGGCTATTATTCGGAAGAAATCGGGCGGGTTGGATTCTTCGAAGGCGTAG 456 0.5987 MLPTATADGVPAPYNSTVATQLGRRRIPIHTTFYWDHKVDILFRCWPGDSAAMYAVALLLVFAMAVLVEWLSFTNIVKLKPGASNDVVGGLLKTGLYGVRSALSYLVMLAVMSFNGGVFVVAIGGHVIGFLIFGTRAIIRKKSGGLDSSKA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1215 151 PANTHER COPPER TRANSPORTER 4 6 141 - -
Ssu3g1215 151 Pfam Ctr copper transporter family 32 74 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g1215 151 Pfam Ctr copper transporter family 91 133 IPR007274 GO:0005375|GO:0016021|GO:0035434
Ssu3g1215 151 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 6 141 IPR007274 GO:0005375|GO:0016021|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1215 Ssu-Chr3 29606970 29607425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1215 32 136 Inorganic Solute Cotransporters AT5G59030 48.571 8.04e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1215 K14686 - gmx:100803410 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1215 3 29606970 29607425 Ssu3g1215 3 29606970 29607425 ECH