Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1209 ATGTCAACTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATCATCGCCGTTCGGTTGTGGGAAGTGATGTGAGTGGTGAAGGGAGCGTGTGCTTCTCTGATGCTGATGATGGTTCATGCTATTCCCGTTTCTACTCAACAAATGGTGGCTCATACGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCCTCATTCTCGGAGAGCTTCCTCTGTTTCTGAATGTTCTGTGGAGGTGGAAACCAGAACTGGGGTTCCTGAGGTCAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAGTCTGGTGCCCCCATCGAATTGGGTTGTTCCTGTAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCTGTTGCTCGGAATGTTTACGGAGCGAATGAGGAGTCAATGGAGCATTTGAGCGATGCTAACAATGCTACTACAGCAGCCACACTCTCCACACCAGCTCCTTCAGCAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCCTAG 690 0.471 MSTLQMSHVDLEQGNHRRSVVGSDVSGEGSVCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGGVPHSRRASSVSECSVEVETRTGVPEVKVHLAKVERDCRICHMGLESESHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGANEESMEHLSDANNATTAATLSTPAPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1209 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Ssu3g1209 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Ssu3g1209 229 PANTHER OS01G0850200 PROTEIN 5 228 - -
Ssu3g1209 229 SUPERFAMILY RING/U-box 102 160 - -
Ssu3g1209 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Ssu3g1209 229 PANTHER ZINC FINGER, RING-CH-TYPE 5 228 - -
Ssu3g1209 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Ssu3g1209 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1209 Ssu-Chr3 29457829 29460407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1209 69 229 C3H Transcription Factor Family AT5G05830 62.346 2.80e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1209 - - gmx:100808666 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1209 3 29457829 29460407 Ssu6g2987 6 68649052 68653981 ECH
Ssu3g1209 3 29457829 29460407 Ssu4g2257 4 53500537 53503817 ECH
Ssu3g1209 3 29457829 29460407 Ssu3g1209 3 29457829 29460407 ECH