Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1185 ATGGAGATTAGCATAATCTGTCATTGTCTTTTGTATGCAACCCCTCACGTTGCCATGGATGATAGATACTCGTCTGCAAAGTTTGAACTCCTGCTACGCAAGGGAGAGGACAAGGtgaaaattccaaattttttcTTCCGGAAATGGGGAAATGAGCTCAGCAACAGAGTCCTTGTTGAGGACAATGAAGGGGACCTTTATGCCATTGACATTCATGTCGAGCAATTGGAGGGTAACGCTATTGCATACTTCATCAATGGAATAACAGATATAAGAGATATTTATTGCACTCATCGCACATGCTTGGCAAACTTTCAATTTATGGGCCAAAGCAAGTTCGTCGCCCACATGACTCCGTTAAGGCCTTCACGCAATGAAGATCCAGCAAGCATGCCACCTCCAACTGTACCCCGCGTACCTGCAGTACCTGTTGAGGAGGTCACACTTCTGTATTGGGAAAAAGAAATCACTCATAACCTCATGCGTTGTGGCCACGCATTGtccATTCCAGCTCTTGTAAAAAAGGACGGATTTCAACGTCGTCAACGAAAGGTACAAGTCACATTACCTGATGGTAAGCAAACCACATGGGAGATATTGTGGTATTCCCACCAGTGTAAATTTGGACATGGATGGTATTCATTCTGCAGGGGAAGCAACCTCGTTGAGGGAGATGTTGTCATTTTTCAGATGTTGAAAAGTGCTAAGGAAGtttatgtttcaattaaaaaggcTTAA 738 0.4187 MEISIICHCLLYATPHVAMDDRYSSAKFELLLRKGEDKVKIPNFFFRKWGNELSNRVLVEDNEGDLYAIDIHVEQLEGNAIAYFINGITDIRDIYCTHRTCLANFQFMGQSKFVAHMTPLRPSRNEDPASMPPPTVPRVPAVPVEEVTLLYWEKEITHNLMRCGHALSIPALVKKDGFQRRQRKVQVTLPDGKQTTWEILWYSHQCKFGHGWYSFCRGSNLVEGDVVIFQMLKSAKEVYVSIKKA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1185 245 CDD B3_DNA 154 244 IPR003340 GO:0003677
Ssu3g1185 245 Pfam B3 DNA binding domain 163 242 IPR003340 GO:0003677
Ssu3g1185 245 ProSiteProfiles B3 DNA-binding domain profile. 152 245 IPR003340 GO:0003677
Ssu3g1185 245 Gene3D - 148 245 IPR015300 -
Ssu3g1185 245 SUPERFAMILY DNA-binding pseudobarrel domain 149 241 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1185 Ssu-Chr3 28229828 28230894 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1185 B3 6.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1185 - K03555 ccaj:109793570 127.102