Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1181 ATGCTTCAGATTCGACTTAGTAAGGCTCCTGCATCAGAAGGGTCCGCAGGGGTGAAGCTGTCACCTGTTGAGACTGTTACAGTTGCTTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACTGCTGCTTCCCTTGTGAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCGGTCGCCATTTATGGACGGCTGAGCCCTTGTGAGCATGCCTTTGTCTGGATTGTGCTAGAAGCGATTCAATGTGCTACCTCTTCAGATTCCACTGCTCGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAAACTCGTAGACAGCCACCTAGAGAGCAACCATCTTCAAGGCAGACCCTGCAGCCAAAGCCACCATATTTTGGTCAACAACATCACCCTTCAGATACCATGTCTGGCTCTGTCGGAGGTGGACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTGCTGACAGGCAACAAGCAGTTGGTCCAGAGACCCCATTTCCTGAGTATCCAACAATGCACCCAGCACAACCTTCCAATGTTCCCTCACTGGTTACTTCAAACCCAATGCTGAACCCTCCTCTGCCATTTGGTTACCCCCCTTACCCAAATGAAAGAGGTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGCTGCTGATATAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGTATACTGGCACCACAGCCCATGCCCCtcccaccaccacctccacctccacctcacATGTCACATTTGAAGCAGAACTACTATTCTGGGGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGACAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1023 0.4956 MLQIRLSKAPASEGSAGVKLSPVETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFVWIVLEAIQCATSSDSTARGPQRPVFSPGSNSQQHDLEDKTRRQPPREQPSSRQTLQPKPPYFGQQHHPSDTMSGSVGGGQQGFHQQSFDMQHPPQEPSQFADRQQAVGPETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPLPFGYPPYPNERGQPFYAAPYDMPRQDSAADIGIGGVPFEQAQGGMVVDPRDAKGILAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGGQG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1181 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 92 - -
Ssu3g1181 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 105 267 IPR040383 GO:0016567|GO:0061630
Ssu3g1181 340 MobiDBLite consensus disorder prediction 140 198 - -
Ssu3g1181 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 92 IPR040383 GO:0016567|GO:0061630
Ssu3g1181 340 MobiDBLite consensus disorder prediction 286 340 - -
Ssu3g1181 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 105 267 - -
Ssu3g1181 340 MobiDBLite consensus disorder prediction 106 126 - -
Ssu3g1181 340 MobiDBLite consensus disorder prediction 215 229 - -
Ssu3g1181 340 MobiDBLite consensus disorder prediction 106 241 - -
Ssu3g1181 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 117 IPR013083 -
Ssu3g1181 340 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1181 Ssu-Chr3 28032798 28036652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1181 1 337 C2H2 Transcription Factor Family AT5G01160 35.526 6.07e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1181 K15685 - gmx:100817582 391.349