Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1180 ATGCTTCAGATTCGACTTAGTAAGGCTCCTGCATCAGAAGGGTCCGCAGGGGTGAAGCTGTCACCTGTTGAGACTGTTACAGTTGCTTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACTGCTGCTTCCCTTGTGAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCGGTCGCCATTTATGGACGGCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTGCTAGAAGCGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATCTGTGCAGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAATCTGAATTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAACCTACAGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAAACTCGTAGACAGCCACCTAGAGAGCAACCATCTTCAAGGCAGACCCTGCAGCCAAAGCCACCATATTTTGGTCAACAACATCACCCTTCAGATACCATGTCTGGCTCTGTCGGAGGTGGACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTGCTGACAGGCAACAAGTAGTTGGTCCAGAGACCCCATTTCCTGAGTATCCAACAATGCACCCAGCACAACCTTCCAATGTTCCCTCACTGGTTACTTCAAACCCAATGCTGAACCCTCCTATGCCATTTGGTTACCCCCCTTACCCAAATGAAAGAGGTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGCTGCTGATATAGGTGCAGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAGTGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGTATACTGGCACCACAGCCCATGCCCCtcccaccaccacctccacctccacctcacATGTCACATTTGAAACAGAACTACTATTCTGGGGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGACAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1320 0.4811 MLQIRLSKAPASEGSAGVKLSPVETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKSEFESHIQDSHANLLRPNADKEDGNESEAQSVRQPTASDSTARGPQRPVFSPGSNSQQHDLEDKTRRQPPREQPSSRQTLQPKPPYFGQQHHPSDTMSGSVGGGQQGFHQQSFDMQHPPQEPSQFADRQQVVGPETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPMPFGYPPYPNERGQPFYAAPYDMPRQDSAADIGADQSSLLGFPQGVPSGPNFPGNYPQPWNSGIGGVPFEQAQGGMVVDPRDAKGILAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGGQG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1180 439 MobiDBLite consensus disorder prediction 209 267 - -
Ssu3g1180 439 MobiDBLite consensus disorder prediction 153 295 - -
Ssu3g1180 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Ssu3g1180 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 413 - -
Ssu3g1180 439 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Ssu3g1180 439 MobiDBLite consensus disorder prediction 391 407 - -
Ssu3g1180 439 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Ssu3g1180 439 MobiDBLite consensus disorder prediction 385 439 - -
Ssu3g1180 439 MobiDBLite consensus disorder prediction 166 195 - -
Ssu3g1180 439 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Ssu3g1180 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 413 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1180 Ssu-Chr3 28008571 28012436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1180 1 436 C2H2 Transcription Factor Family AT5G01160 44.820 4.94e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1180 K15685 - gmx:100817582 800.431