Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1163 ATGAATAGGGGAATTGAAGTATTCTCTCCAGCCTCCTATCTCCAAAATTCCAATTGGTTGTTCCAGGAAAGCAAGGGAGCAAGATGGACTTCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCTGGGAAAACTGTTGGTGATGTGCTCAAACAGTACAGGGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACCAGTCCTTTCACATTGGAGTGGGTTAACAACCAAGGCTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGAGAAAAGGGGTGCATCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAGTTTTTGCTGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCCACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACGGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTTCTTCATCAGACAGTACCAGGCCTTCTTCACCACTGCTGAATCAGAGATTGTCTAGCACGGTTAAACCGGAATATGAGTGGAAATTGCCATGTGAAGGCATGCCAATTGTTTTCAATTCAACAAATGGAAACATGCTCATGGCAACACCACTGCATGGGATTTCTTCATACGAATCTAGACCACAGGAGCATAATTTACTCAGACAATCTCAATGGATGCCAGTTTTCACCTTATGA 861 0.4483 MNRGIEVFSPASYLQNSNWLFQESKGARWTSEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVLKQYRELEEDVSVIEAGLIPVPGYTTSPFTLEWVNNQGYDEFKQFCSVGEKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSSSSDSTRPSSPLLNQRLSSTVKPEYEWKLPCEGMPIVFNSTNGNMLMATPLHGISSYESRPQEHNLLRQSQWMPVFTL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1163 286 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Ssu3g1163 286 Gene3D - 21 88 - -
Ssu3g1163 286 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Ssu3g1163 286 CDD SANT 28 74 IPR001005 -
Ssu3g1163 286 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Ssu3g1163 286 Gene3D - 134 184 - -
Ssu3g1163 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 256 IPR043363 -
Ssu3g1163 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Ssu3g1163 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Ssu3g1163 286 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Ssu3g1163 286 CDD SANT 135 180 IPR001005 -
Ssu3g1163 286 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Ssu3g1163 286 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Ssu3g1163 286 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 256 - -
Ssu3g1163 286 SMART sant 25 77 IPR001005 -
Ssu3g1163 286 SMART sant 132 182 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1163 Ssu-Chr3 27659451 27660840 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu3g1163 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1163 - - gmx:100775697 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1163 3 27659451 27660840 Ssu6g3002 6 68825856 68827288 ECH
Ssu3g1163 3 27659451 27660840 Ssu4g2324 4 55633064 55634602 ECH
Ssu3g1163 3 27659451 27660840 Ssu3g1163 3 27659451 27660840 ECH
Ssu3g1163 3 27659451 27660840 Ssu6g2614 6 61232046 61233361 ECH
Ssu3g1163 3 27659451 27660840 Ssu9g1184 9 44216496 44217845 ECH