Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1146 ATGTCTAATGGCAGTCTAGAAGAGTGGTTGCATCCTGTAAATAATATGCAATATCAGACCAAGACACTGACATTTATCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTTGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAAGTTTTCCACACAATCAGTTATGTCAGCTAGCCTAAGAGGTTCTATTGGATACATCCCTCCAGGTATGTTATGCAAAATTCAAAGTGCTAAATTGTAg 351 0.3789 MSNGSLEEWLHPVNNMQYQTKTLTFIQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSKFSTQSVMSASLRGSIGYIPPGMLCKIQSAKL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1146 116 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 106 - -
Ssu3g1146 116 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1146 116 Pfam Protein kinase domain 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1146 116 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Ssu3g1146 116 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 106 - -
Ssu3g1146 116 SUPERFAMILY Protein kinase-like (PK-like) 1 110 IPR011009 -
Ssu3g1146 116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1146 Ssu-Chr3 27117355 27117705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1146 1 105 Receptor kinase-like Gene Family AT3G47570 57.798 7.07e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu3g1146 Pkinase 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1146 - - gmx:106794146 205.297