Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1144 ATGAGCACTTTTGGTGTATTCCAATTCCTTTGTGGAATTCTTCTCTTGTGCATGAGCACATGTCAAGACTCAGCAACTGCAACAACCCTTCAAGGAGATGAAACTGATCTACACACTTTACTTGACTTCAAGAATAGGATAGTTCAAGATCCATTCCACATAATGAGTTTGTGGAATGATTCCATCCATCACTGCAACTGGGTAGGAATCACCTGCAACAACTCCAGTGGAAGGGTCATGTATTTGATCCTTGCAGACATGACACTAGCTGGCACTCTTCCACCATCTATAGGAAATCTCACATTCCTTACCAGACTCAACATCAGAAATAGTAGTTTCCATGGAGAGTTTCCTCAAGAAGTTGGACGCCTACAATATCTGCAACATATAAACATTAGTTACAATTCTTTTGGTGGTAGTATTCCAACTAATCTAAGTCACTGCACAGAACTTGGTATAGTATCTGCTGGTCATAACAACTTCACAGGAACAATTCCAGCATGGATAGGAAACTCTTCATCTTTATCTTTACTTAACCTTGCCGTGAACAACTTCCATGGAAGCATACCAAATGAGGTAGGCCAATTATCAAGCTTGACACTGCTTGCACTAAATGGAAATTACTTGTCTGGAACAATTcctcctcttatttttaatatttcttcctTATACTTTTTCACTGTTTCTCAAAATCATCTGCATGGTAACATACCAGCTGATGTTGGTTATACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAACAATTTCACTGGAACAATTCCTGAATCGCTGTCAAATGCATCAAGACTAAAAATTCTTGACTTTGCTGAAAATGGTCTCACTGGCACACTTCCTAAGAACGTAGGAAGGTTGCCCCATTTGAAAAGACTCAATTTTGATGACAATAGACTTGGAACTGGGAAAGCTGGTGATCTGAATTTTCTTGCTTCCTTGGTTAATTGTACTGCTCTAGAAGTTTTGGGCCTTGCTATAAATGGTTTTGGAGGAGAATTGCCTAGCTCAATTGCTAATCTTTCAACCCAATTAACTATACTTACATTAGGTCTCAATGCAATACATGGAAGTATCCCAATTGGGATCAGGAACCTTGCTAACTTAACCGTTCTGGGATTGGAAGAGAACAGCCTAAGTGGTTCTGTTCCTCATACGATAGGCATGCTTCAAACGTTAGATAGTTTGGAATTGAATGGCAACAACTTCTTTGGGGTAATCCCTTCATCCATTGGAAACTTGACAAGGTTAACAAGGTTAAACATGGAGGAGAACAACTTTGAGGGAAGTATACCAGCAAGTCTAGGAAAATGCCAAAGCTTGTTGATGCTAAATTTTAGCCATAACATGCTCAATGGTACCATACCAGGACAAGTCCTTGCCTTGTCTTCTCTTTCAATTTACTTGGACTTGTCTCATAATGCTTTGGCAGGGTCTGTGCCTGTTGAAGTGGGCAAGTTGGTCAATCTTGCAGAATTGGACCTCTCAGAGAACAAATTGTCTGGCATGATTCCATCCTCTCTTGGCAGCTGTATTAGTTTAGAATGGATTCATTTGCAGGGTAACTTTTTTGAGGAAAACATTCCATCAACTATTCAGAATTTGAGAGGTTTAGAAGATATGGATCTGTCACGCAATAACTTGTCTGGGGAGATTCCTGAAGTTCTTGGTGAGTTCAAAGTGCTCCTGCATCTCAATCTTTCTTACAATGATTTCAATGGCAAAATACCAATGAATGGAATCTTCAAGAATGCAACTTCCTTTTCAGTGTATGGAAACAGCAAGCTCTGTGGTGGTGTTCCAGAGTTAGATTTACCTGCATGCACCATCACAAAAGCCTCTtccttcaaaaaatttcatgacCCCAAGGTGGTTATTCCTGTAATTATTGCAATTGTTTTTGTGCtcattctattttgttttcttgcaaTCTTTATGGTAAAAAGAGCAAGAAAGAGGGCTTCTAGATCAACTACCACAAGGGAATTAGAATTGCAAATTTCATACTCAGAAATTGCAAAATGCACTGGTGGATTCTCCCAAGATAACCTGATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAAGTGTTGCAGTTAAAGTATTAAATCTTGAACAAAGAGGAGCCTCAAAGAGCTTCATTGACGAGTGCCAAGTTCTAAGAAATATAAGGCACCGCAACCTTCTCAAGATCATAACAGCCATCTCAAGTGTAGATCATCAAGGTAACGACTTCAAAGCCCTGGTGTTTGAGTTCATGCCAAATGGAAGTTTGGAAGATTGGTTACATCCTATAGATAATCTTCATAAACGAACAAAGACATTGACATTTATCCAAAGACTGAACATAGCAATTGATATTGCTTGCGCCCTGGAATATCTCCACCACTTTTGTCAAGCTCCAATTGTTCATTGTGACATAAAGCCAAGTAATGTGCTTCTTGATAATGATATGGTAGCACACGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAACGGTTCTCTCAAACAATCAACTATGTCGGCTGTGGTAAAAGGCTCTATTGGATATATCCCTCCAGAATATGGAATGGGTGGCCACCCTTCTGCACTGGGAGACATTTACAGCTATGGGATACTATTACTTGAGATTTTCACACGAAAAAGACCAACAGATGAGATGTTTGAAGGTGTCAGCATGGGAATTCACCAGTCTACAGCCTTGGCTTTACCAAATCATGCCATGGATATAATCGACCCTTTATTGCTCCCTAAGCAAGAATTTGATGATAAAGATCCACACCAAGAAGATTCCACAGAGGAGAAAGCAATATGGAGGGAGAATGAACCTGAAGTAATAGAGGGTTGTTTGGTTTCAGTGCTGCAAATAGGAGTCTCATGCTCTGCAACTTCACCACGTGAAAGGGTGCGTATGACTGAGGTCGTCAACAAACTGCATGCAATTAAAAGATCCTATTTAATACTAAATCAGTCAGAGTAG 3033 0.3907 MSTFGVFQFLCGILLLCMSTCQDSATATTLQGDETDLHTLLDFKNRIVQDPFHIMSLWNDSIHHCNWVGITCNNSSGRVMYLILADMTLAGTLPPSIGNLTFLTRLNIRNSSFHGEFPQEVGRLQYLQHINISYNSFGGSIPTNLSHCTELGIVSAGHNNFTGTIPAWIGNSSSLSLLNLAVNNFHGSIPNEVGQLSSLTLLALNGNYLSGTIPPLIFNISSLYFFTVSQNHLHGNIPADVGYTLPNLETFAGGVNNFTGTIPESLSNASRLKILDFAENGLTGTLPKNVGRLPHLKRLNFDDNRLGTGKAGDLNFLASLVNCTALEVLGLAINGFGGELPSSIANLSTQLTILTLGLNAIHGSIPIGIRNLANLTVLGLEENSLSGSVPHTIGMLQTLDSLELNGNNFFGVIPSSIGNLTRLTRLNMEENNFEGSIPASLGKCQSLLMLNFSHNMLNGTIPGQVLALSSLSIYLDLSHNALAGSVPVEVGKLVNLAELDLSENKLSGMIPSSLGSCISLEWIHLQGNFFEENIPSTIQNLRGLEDMDLSRNNLSGEIPEVLGEFKVLLHLNLSYNDFNGKIPMNGIFKNATSFSVYGNSKLCGGVPELDLPACTITKASSFKKFHDPKVVIPVIIAIVFVLILFCFLAIFMVKRARKRASRSTTTRELELQISYSEIAKCTGGFSQDNLIGSGSFGSVYKGTLSSDGSSVAVKVLNLEQRGASKSFIDECQVLRNIRHRNLLKIITAISSVDHQGNDFKALVFEFMPNGSLEDWLHPIDNLHKRTKTLTFIQRLNIAIDIACALEYLHHFCQAPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESNGSLKQSTMSAVVKGSIGYIPPEYGMGGHPSALGDIYSYGILLLEIFTRKRPTDEMFEGVSMGIHQSTALALPNHAMDIIDPLLLPKQEFDDKDPHQEDSTEEKAIWRENEPEVIEGCLVSVLQIGVSCSATSPRERVRMTEVVNKLHAIKRSYLILNQSE 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1144 1010 SMART serkin_6 685 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1144 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Ssu3g1144 1010 Gene3D Transferase(Phosphotransferase) domain 1 767 1008 - -
Ssu3g1144 1010 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 31 1000 - -
Ssu3g1144 1010 SUPERFAMILY L domain-like 34 306 - -
Ssu3g1144 1010 Gene3D Ribonuclease Inhibitor 150 243 IPR032675 -
Ssu3g1144 1010 PRINTS Leucine-rich repeat signature 541 554 - -
Ssu3g1144 1010 PRINTS Leucine-rich repeat signature 496 509 - -
Ssu3g1144 1010 Pfam Protein kinase domain 686 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1144 1010 SUPERFAMILY Protein kinase-like (PK-like) 664 996 IPR011009 -
Ssu3g1144 1010 Pfam Leucine rich repeat 519 578 IPR001611 GO:0005515
Ssu3g1144 1010 ProSiteProfiles Protein kinase domain profile. 685 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1144 1010 SMART LRR_typ_2 293 316 IPR003591 -
Ssu3g1144 1010 SMART LRR_typ_2 420 444 IPR003591 -
Ssu3g1144 1010 SMART LRR_typ_2 196 220 IPR003591 -
Ssu3g1144 1010 SMART LRR_typ_2 541 565 IPR003591 -
Ssu3g1144 1010 SMART LRR_typ_2 372 396 IPR003591 -
Ssu3g1144 1010 SMART LRR_typ_2 493 517 IPR003591 -
Ssu3g1144 1010 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 1000 - -
Ssu3g1144 1010 Gene3D Phosphorylase Kinase; domain 1 665 766 - -
Ssu3g1144 1010 Gene3D Ribonuclease Inhibitor 35 149 IPR032675 -
Ssu3g1144 1010 SUPERFAMILY L domain-like 349 604 - -
Ssu3g1144 1010 Gene3D Ribonuclease Inhibitor 244 311 IPR032675 -
Ssu3g1144 1010 CDD STKc_IRAK 691 996 - -
Ssu3g1144 1010 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Ssu3g1144 1010 Gene3D Ribonuclease Inhibitor 312 615 IPR032675 -
Ssu3g1144 1010 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1144 Ssu-Chr3 27064455 27067948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1144 33 1004 Receptor kinase-like Gene Family AT3G47570 44.433 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu3g1144 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1144 - - gmx:100785230 1747.64