Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1139 ATGTCTTGCAATTGGTTTGGTGCTTTGAATTGGTGTGGGGGGAGGGATGATCCTGCAGACCAGCCACATGAACAAGTGATTGGAACTAGAAAGTTTAGCTATAACTCATTGAGATCAGCAACGGGAGATTTTCATCCTTCAAGCAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTATTCAGATTGCTATCAAGTCTCTTTCTGTAGAATCTAGACAAGGAACCCATGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTGTTGAGGGTAGTCATCGAATATTGGTTTATGAATTTTTGGAGAACAATAGCCTTGCGAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGAATTGGCCAAAGAGGGCAGCTATTTGTCGTGGCACGGCTTCTGGTCTAAGTTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGGGATATCAAGGCCAGCAACATATTGCTGGATGGGAACTTTAATCCGAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTGGCACCAGAATATGCACTTATGGGACAACTTACAAAGAAGGCAGACGTATATAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCATAGCTGCATTTGAAGAGGACCTTTTGGTTTTGGTAGAATGGGCTTGGAAGCTGAAAGAAACAAATAGGCTTCTGGACCTTGTTGATTCAGAACTAAGTGATTATGATGAGAGTGAGGTGTATCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAGGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTGACTGAGCCTGGAATATACAGATGGCACACCACTGGAAAGAAGGGCGGTTCTTTGAACGAGACATCATCTTCTCAAGCTATCAAGtacaaaaaaactgaaaatccACATGATGCAACTTCAACCCACTTTAGTGGTAGTGATATTGTGACAGAGATGCTTCCAAGATGA 1143 0.4094 MSCNWFGALNWCGGRDDPADQPHEQVIGTRKFSYNSLRSATGDFHPSSKIGGGGYGVVYKGVLRDGIQIAIKSLSVESRQGTHEFMTEIDMISNIRHPNLVELIGCCVEGSHRILVYEFLENNSLASSLLGSKSKYVALNWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALMGQLTKKADVYSFGILMLEIISGKSSSIAAFEEDLLVLVEWAWKLKETNRLLDLVDSELSDYDESEVYRFLIVALFCTQSAAQHRPSMRQVLEMLSKEVHLNEKALTEPGIYRWHTTGKKGGSLNETSSSQAIKYKKTENPHDATSTHFSGSDIVTEMLPR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1139 380 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1139 380 Gene3D Phosphorylase Kinase; domain 1 18 119 - -
Ssu3g1139 380 SUPERFAMILY Protein kinase-like (PK-like) 23 314 IPR011009 -
Ssu3g1139 380 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Ssu3g1139 380 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 371 - -
Ssu3g1139 380 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Ssu3g1139 380 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 371 - -
Ssu3g1139 380 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1139 380 CDD STKc_IRAK 63 316 - -
Ssu3g1139 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Ssu3g1139 380 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1139 Ssu-Chr3 26972011 26980247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1139 32 329 Receptor kinase-like Gene Family AT1G56120 54.027 2.28e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1139 PK_Tyr_Ser-Thr 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1139 - - gmx:100785766 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1139 3 26972011 26980247 Ssu3g1139 3 26972011 26980247 ECH