Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1132 ATGTTTGACAGAGAGGTGCACCTAAAACACATGGGAAGCAGTTTTCTATGGAACTGTACTAAAAAATTCATCACAGCTGCGGTCATCACTGTGACTGTGTCTGATCGTTATGTGACCGTTATTCCAGTTCGAGGTGGCTCTATGTCTCCCACATTTAATCCCAAAACTGGTTCTCTGATGGAAGatgtttttgATGACTATGTTTTGGTTGAGAAATTTTGCCTTGGGAACTACAAGTTTTCACATGGCGATGTGGTGGTCTTCCGCTCCCCACTGAATCACAAGGAGACACACATAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTTATCATAACCACGATGTGATTCAGATTCCATTAGGACATTGTTGGGTTGAGGGAGACAACACAGCTTCTAGCATGGATTCAAAATCATTTGGACCAATTCCTTTGGGCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCACAAAGATTATCTTCTTTTTAG 537 0.4264 MFDREVHLKHMGSSFLWNCTKKFITAAVITVTVSDRYVTVIPVRGGSMSPTFNPKTGSLMEDVFDDYVLVEKFCLGNYKFSHGDVVVFRSPLNHKETHIKRIAALPGEWFGTYHNHDVIQIPLGHCWVEGDNTASSMDSKSFGPIPLGLIRGRVTHVVWPPQRIGAVKSTPPQRLSSF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1132 178 SUPERFAMILY LexA/Signal peptidase 39 167 IPR036286 -
Ssu3g1132 178 Gene3D Umud Fragment, subunit A 35 171 - -
Ssu3g1132 178 PRINTS Bacterial leader peptidase 1 (S26A) family signature 98 110 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu3g1132 178 PRINTS Bacterial leader peptidase 1 (S26A) family signature 36 52 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu3g1132 178 PRINTS Bacterial leader peptidase 1 (S26A) family signature 121 140 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ssu3g1132 178 Pfam Signal peptidase, peptidase S26 115 159 IPR019533 GO:0004252|GO:0006465
Ssu3g1132 178 Pfam Signal peptidase, peptidase S26 18 108 IPR019533 GO:0004252|GO:0006465
Ssu3g1132 178 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 13 173 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Ssu3g1132 178 CDD S26_SPase_I 43 154 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1132 Ssu-Chr3 26828984 26830783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1132 48 171 MADS-box Gene Family AT1G29960 37.692 3.17e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1132 K09648 - gmx:100527429 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1132 3 26828984 26830783 Ssu3g1132 3 26828984 26830783 ECH