Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1130 ATGGGGTTTGGtctaaaaagaaggaagaagaaagaaggaggagaaggagCGATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAATACACTAGCTTCTGAGTATCCGAGTCGCGGTGCCTGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTATTCCTTTTTCTGGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTGGGATTGCTCAGAATTCTTATATACAAGGCATATGAAGATGGGAAGACAACCATATCCATTTACGAAAGAAAAGCCACTCTAAAGGAGTTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGGAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACATGGAGAGAGAAGAAGAGTgtggtatttgcttggagatgAATAGCATGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTACCAAGACTGGCACACAAGATCTCAGTCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGACCTTTGGATCTTCATTAGCAGCAGTGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGGCTATTTATGTACATAGAAAGTTTGCCTCTCATTGCCAGACCCTATATTATATCGTCGCCACTAGTGATTGCCAATTAG 774 0.3837 MGFGLKRRKKKEGGEGAMRKSFKDSLKALEADIQFANTLASEYPSRGACFQMRLSYSPAAQLFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKATLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYKLKDLTSKGKLSEIDMEREEECGICLEMNSMVVLPNCNHSMCMKCYQDWHTRSQSCPFCRDSLKRVNSDDLWIFISSSEINDLASINKENLKRLFMYIESLPLIARPYIISSPLVIAN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1130 257 SUPERFAMILY RING/U-box 150 204 - -
Ssu3g1130 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 209 IPR013083 -
Ssu3g1130 257 SMART ring_2 161 198 IPR001841 -
Ssu3g1130 257 Pfam Zinc finger, C3HC4 type (RING finger) 158 204 - -
Ssu3g1130 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Ssu3g1130 257 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 9 257 - -
Ssu3g1130 257 PANTHER RING FINGER PROTEIN 41, 151 9 257 - -
Ssu3g1130 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1130 Ssu-Chr3 26818640 26821607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1130 105 206 C3H Transcription Factor Family AT5G01960 28.037 1.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1130 K25840 - gmx:100814293 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1130 3 26818640 26821607 Ssu3g1130 3 26818640 26821607 ECH