Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1128 ATGGCATGTCCAGAAATGGCAAATCGGAATGGCTCATTGAACTTGAAGCCAAGTGAGACCAGGGGAAAGACCATCACTTGCAAAGCCGCCGTGGCATATGGTCCGGGAGAGGCCTTCGTGGTGGAAAAAATTCTTGTTCATCCCCCTCAGAAAATGGAGGTTCGAATCAAGATCATCTACACTTCTATTTGTCACACCGATCTTAGCGCTTGGCAAGGCGAGAATGAGGCTCAGCGTGCTTACCCTCGGATTTTGGGGCATGAAGCATCCGGGATTGTGGAGAGTGTGGGGGAAGGAGTGAGTGAAGTGAAGGAAGGGGATATTGTGGTGCCAATATTCAATGGGGAGTGTGGTGAGTGTTGCTATTGCAAGTGTGAGAAGACCAACATGTGTGAGAGGTTTGGGGTGAACCCCATGAAGAAGGTGATGCAAGGCGATGGCACGTGCAGGTTCTCCACTATTCATGGCAAACCCATCTTCCATTTCTTGAACACTTCCACTTTCTCAGAGTACACGGTGGTGGATTCGGCCTGTGTCGTGAAGCTTCACCCTGACCACAGTCTCAGCCTCAAAAATCTCACCTTGCTCAGCTGCGGTGTTTCCACAGGGGTTGGAGCTGCTTGGAATACAGCTAATGTGCATGCTGGTTCATCTGTAGCTGTTTTCGGTTTAGGAGCTGTAGGGCTCGCTGTTGCTGAAGGGGCACGAGCCAGAGGTGCATCCAAAATAATAGGTGTGGACATCAACCCTGGCAAATTCACAAAAGCCCAAGCTATGGGAGTGACAGACTTCATAAACCCAAAGGATGAAGAGAAGCCGGTTTACGAGcTAATTAGAGAAATGACTGATGGAGGTGTACACTACAGTTTTGAATGTACTGGAAACCTAGACGTTCTAAGGGATTCCTTCTTGTCTGCTCATGAGGGTTGGGGGTTGACAGTAGTGTTGGGAATTCATTCATCACCAAAGCTGCTTCCCATCCATCCAATGGAGCTCTTCGATGGTCGCCAAATTGTAGGATCAGTGTTTGGAGGTTTCAAAGGGAAAAGTCAGTTGCCTCACTTTTGCCACACAATGTGGACATGGAGTGGTGAAGCTAGACAATTTCATCACTCACGAGCTGCCCTTTGA 1131 0.4872 MACPEMANRNGSLNLKPSETRGKTITCKAAVAYGPGEAFVVEKILVHPPQKMEVRIKIIYTSICHTDLSAWQGENEAQRAYPRILGHEASGIVESVGEGVSEVKEGDIVVPIFNGECGECCYCKCEKTNMCERFGVNPMKKVMQGDGTCRFSTIHGKPIFHFLNTSTFSEYTVVDSACVVKLHPDHSLSLKNLTLLSCGVSTGVGAAWNTANVHAGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINPGKFTKAQAMGVTDFINPKDEEKPVYELIREMTDGGVHYSFECTGNLDVLRDSFLSAHEGWGLTVVLGIHSSPKLLPIHPMELFDGRQIVGSVFGGFKGKSQLPHFCHTMWTWSGEARQFHHSRAAL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1128 376 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 20 357 - -
Ssu3g1128 376 Pfam Zinc-binding dehydrogenase 226 345 IPR013149 -
Ssu3g1128 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 358 IPR036291 -
Ssu3g1128 376 PANTHER ALCOHOL DEHYDROGENASE 20 357 - -
Ssu3g1128 376 SUPERFAMILY GroES-like 20 222 IPR011032 -
Ssu3g1128 376 Pfam Alcohol dehydrogenase GroES-like domain 53 181 IPR013154 -
Ssu3g1128 376 Gene3D - 30 358 - -
Ssu3g1128 376 Gene3D - 203 341 - -
Ssu3g1128 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1128 Ssu-Chr3 26768693 26777045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1128 53 356 Monolignol Biosynthesis Gene Families AT2G21890 26.814 3.55e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1128 K00001 - gmx:100815166 588.956