Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1124 ATGGGTTCTCACCAACTAGAGCCATGGCTATTGGAGAATGGGAACCCGAAAGTGTTGACCAAGGAGATGAGGCATGGCCGCACTGCACACAGCAGATCATCCTGCTCCTTGCGCAGGAAGTCTGACCGCACTCTCGTCTCCAAGATTCGCTGTGCCTTACTCAGAGACCTGCTTTCCAACTTCCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCCGTTGCCATCACTGCCGAGTGCTTTGGCCTTGGGAGACCTTGGGTTTTTGTATTGAGCTTGCTCGGGCTTATCCCCCTCGCTGAACGTGTGAGCTTCATCACAGAACAGGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAATGCGACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCCCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGCATTGCAAACATTAGAGTGgaacaaaaatatgatagaAGACAAGGAGATGTGAACTCACTTATGCTGTTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTCAACTATAGTGCTGCCTCAGCTGCTCTCACTGCAGACCCTTCACTCCACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATATTTTGCATACATTATCTTTCAACTGTGGACACACAGGGAGTTATTTGAAGCGGAAGATGAGGATGAAGATGTCAACAAAGGTTCAGAAGAACAACCCGTGATTGGACTATGGAGTGGCATGGCTTGGCTGGTTGGGATGACTGTATTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATTTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGGACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCCTTGTGTGTGACCGTTGCTTGGATAATGGGTATCAAAATGGACCTGAACTTCAACCTCCTAGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGTTTCACTTTACAgGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTCATCGGGGCTTGCTTCTTCGTACAAAGAACACCCTTCAACCAAGCCAATGTTACTAACGTCACGCTTAAACCAGCCACTAATGCAGTTTTAAGCGCCTAG 1347 0.4551 MGSHQLEPWLLENGNPKVLTKEMRHGRTAHSRSSCSLRRKSDRTLVSKIRCALLRDLLSNFQEVILGTKLSILIPAIPVAITAECFGLGRPWVFVLSLLGLIPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIRVEQKYDRRQGDVNSLMLLLALLCYLLPMLFNYSAASAALTADPSLHLSRASSIVMLIAYFAYIIFQLWTHRELFEAEDEDEDVNKGSEEQPVIGLWSGMAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKDKLDISLGVALGSATQIAMFVVPLCVTVAWIMGIKMDLNFNLLETGSVALAIIVTSFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPFNQANVTNVTLKPATNAVLSA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1124 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 435 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu3g1124 448 Gene3D - 121 260 IPR044880 -
Ssu3g1124 448 Gene3D - 266 423 IPR044880 -
Ssu3g1124 448 TIGRFAM caca2: calcium/proton exchanger 56 422 - -
Ssu3g1124 448 TIGRFAM cax: calcium/proton exchanger 73 422 IPR004798 GO:0006816|GO:0015369
Ssu3g1124 448 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 3 435 - -
Ssu3g1124 448 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016021|GO:0055085
Ssu3g1124 448 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1124 Ssu-Chr3 26741566 26745484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1124 7 427 Antiporters AT2G38170 69.070 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1124 K07300 - gmx:100779440 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1124 3 26741566 26745484 Ssu3g1124 3 26741566 26745484 ECH
Ssu3g1124 3 26741566 26745484 Ssu4g2366 4 57877957 57881942 PCT