Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1112 ATGGGCGTGGACTACTACAAGCTTCTTCAGGTAGATAGAAGCGCCAAAGATGAGGATCTCAAGAGAGCATATCGAAGGCTAGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCCTATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTATATGATCAGTATGGTGAAGAGGGGTTGAATGGGGTGCCACCGGGTGCCGGTGGTTTTCCTGGTGGCAGCAACGGTGGGCCGACGACATTCCGGTTCAACCCAAGAAATGCAGATGATATATTTTCCGAGTTTTTCGGGTTTTCGAGCCCCTTTGGTGGTGGAATGGGGGACATGGGTGGCCGAGCTGGTGGCTCTGGATTTTCCAGGGCTGGCCCGTTTGGTGAAGATATTTTTGCTCAATTTAGGAGTGGAGCTGGGGAGGGCTCTGGCCATATGCCAAGGAAAGGTGCAGCCATTGAGAAAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGGCTAccaagaaaatgaagatttcAAGGGATGTTAGTGATGCCAGTGGGAAAGGTGCGGCCATTGAGAAAACATTGCATTGTAGTTTGGAAGATTTGTATAAAGGGACTACCAAAAAAGTGAAGATTTCAAGGGATGTTAGTGATGCCAGTGGGAGACCCACCACAGTAGAGGAAATTCTTACAATTGAGATCAAGCCTGGTTGGAAGAAGGGAACAAAAATAACTTTTCCAGAAAAGGGAAATGAGCAGAGAGGAGTTATCCCTGCAGACCTTGTCTTTATTATTGATGAGAAGCCTCATAGCCTCTTTAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAGATATCTCTTGTAGAAGCCTTGACAGGTTACACAGTGCAGCTGACAACCCTTGATGGGCGGAATCTTACAATCCCCATTAACGCCATTATTAGTCCAACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCCATTCCCAAAGAACCTTCCAAGAAGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCTGAACAGAAAAGTGGCATTAAGCGATTATTGACATCTCCATAA 1128 0.4504 MGVDYYKLLQVDRSAKDEDLKRAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGVPPGAGGFPGGSNGGPTTFRFNPRNADDIFSEFFGFSSPFGGGMGDMGGRAGGSGFSRAGPFGEDIFAQFRSGAGEGSGHMPRKGAAIEKTLHCSLEDLYKGATKKMKISRDVSDASGKGAAIEKTLHCSLEDLYKGTTKKVKISRDVSDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRNLTIPINAIISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1112 375 Pfam DnaJ C terminal domain 199 357 IPR002939 -
Ssu3g1112 375 SUPERFAMILY HSP40/DnaJ peptide-binding domain 281 366 IPR008971 GO:0006457|GO:0051082
Ssu3g1112 375 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Ssu3g1112 375 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 195 373 - -
Ssu3g1112 375 CDD DnaJ 4 59 IPR001623 -
Ssu3g1112 375 Gene3D - 162 198 - -
Ssu3g1112 375 Gene3D - 199 276 - -
Ssu3g1112 375 Gene3D - 278 358 - -
Ssu3g1112 375 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Ssu3g1112 375 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 195 373 - -
Ssu3g1112 375 SMART dnaj_3 3 62 IPR001623 -
Ssu3g1112 375 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Ssu3g1112 375 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu3g1112 375 PRINTS DnaJ domain signature 24 39 IPR001623 -
Ssu3g1112 375 PRINTS DnaJ domain signature 62 81 IPR001623 -
Ssu3g1112 375 PRINTS DnaJ domain signature 6 24 IPR001623 -
Ssu3g1112 375 Gene3D DnaJ domain 3 122 IPR036869 -
Ssu3g1112 375 Pfam DnaJ domain 4 67 IPR001623 -
Ssu3g1112 375 SUPERFAMILY HSP40/DnaJ peptide-binding domain 199 278 IPR008971 GO:0006457|GO:0051082
Ssu3g1112 375 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 195 - -
Ssu3g1112 375 CDD DnaJ_C 199 360 - -
Ssu3g1112 375 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1112 Ssu-Chr3 26431301 26437732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1112 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 4.42e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1112 K09510 - gmx:100818358 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1112 3 26431301 26437732 Ssu3g1112 3 26431301 26437732 ECH
Ssu3g1112 3 26431301 26437732 Ssu4g2373 4 58088382 58091964 PCT