Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1110 atggttttcattttcaaacccCGCACCGTTGAAGAGATCTCCAAGGACTATAGCGGCAGAAGAACCGCTGTTATTCGCTCTCTCACTGACGTCTATGGTGTGTTTTTTCAAGATATGGATAACTTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAATTCAGGAGGTTCCGCCGGAGCTCCCTGAGCCAGTTCTTGGAATCAATTCTGCTAGGCATGGCATGAATTGCAGGGACTGGCTTTCTATGGTTGCTGGGCATAGTGATTCGTGGTTGCGTTCTATGGCCTTTTACCTTGGAGCTCGTCTTAACCGCAATGGAAGGAAACCAATTAACGACAAGCCCACTGTGGATAAGGGAAGCAAATCTTGGGGGAGTGCCAAGAGATCTAATGCTGGGCAAGTTAAAAGCAACTCAAAGTTTGCGGATGAGGGATATGAGGAGGATAAGGATGAGCACAATGAAACATTTTGTGGATTCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATCGGCTGCAATATATGTGAGAAGTGGTTCCATGGGGAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAACATAAAGCAATATAAATGTCCGTCATGCAACTTGAGAAGGTCCATGCCCTAG 639 0.4476 MVFIFKPRTVEEISKDYSGRRTAVIRSLTDVYGVFFQDMDNLCLYGHPNEAWEVIQEVPPELPEPVLGINSARHGMNCRDWLSMVAGHSDSWLRSMAFYLGARLNRNGRKPINDKPTVDKGSKSWGSAKRSNAGQVKSNSKFADEGYEEDKDEHNETFCGFCGGNYNADEFWIGCNICEKWFHGECVKITPAKAENIKQYKCPSCNLRRSMP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1110 212 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 108 209 - -
Ssu3g1110 212 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 6 110 - -
Ssu3g1110 212 ProSitePatterns Zinc finger PHD-type signature. 159 205 IPR019786 -
Ssu3g1110 212 SUPERFAMILY FYVE/PHD zinc finger 147 210 IPR011011 -
Ssu3g1110 212 MobiDBLite consensus disorder prediction 110 147 - -
Ssu3g1110 212 PANTHER CPG BINDING PROTEIN 6 110 IPR045104 GO:0006355|GO:0042393
Ssu3g1110 212 SMART PHD_3 158 206 IPR001965 -
Ssu3g1110 212 Pfam Alfin 9 117 IPR021998 GO:0006355|GO:0042393
Ssu3g1110 212 CDD PHD_AL_plant 158 208 IPR044104 -
Ssu3g1110 212 MobiDBLite consensus disorder prediction 124 139 - -
Ssu3g1110 212 PANTHER CPG BINDING PROTEIN 108 209 IPR045104 GO:0006355|GO:0042393
Ssu3g1110 212 Pfam PHD-finger 158 206 IPR019787 -
Ssu3g1110 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 206 IPR013083 -
Ssu3g1110 212 ProSiteProfiles Zinc finger PHD-type profile. 156 208 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1110 Ssu-Chr3 26323341 26326804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1110 7 209 Alfin-like Transcription Factor Family AT5G05610 57.576 2.56e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu3g1110 Alfin 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1110 - - gmx:100782478 322.398