Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1106 ATGGCTTCCAAACCCCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGCTATTATTCGTGCTCTCACTCGCGacGTTGGTGAATTTTACGGGCTCTGTGATCCAGCTAAGGATAACTTGTGCCTCTATGGACATCCAAATGAGACCTGGGAAGTAACTCTGCCAACAGAGGAAGTTCCACCGGAGCTCCCCGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGACGTAAGCCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCATGGTTGCTATCCGTGGCATTTTACCTTGGAACTCGTCTTAACCACAATGAAAGGAAACGTTTATTTGGTTTGATCAATGATCTTCCCACCGTTTTTGAAATTGTGACTCACAATGAAACAATTAAGGACAAGCCTACCGTGGATAGTGGAAGCAAATCTCGGGCAAGCACTGAGAGATCTAGCGATGGTTATGAGCAGGATGAAGATAAGTGTATTGAAATACTTTGTGGATGCTGCGGTGGAAATTACAATGGAGATGAATTTTGGATCGGCTGCGATATATGTGAGTGGTGGTACCATGGGAGGTGTGTTTTGATTACCCCTAGAAAGGCTGAGACCATGAAGCAATACAAATGTCCATCATGCAGCTTGAGGAGTGGCAGGCCCTAG 678 0.4676 MASKPRTVEEIFKDYSARRTAIIRALTRDVGEFYGLCDPAKDNLCLYGHPNETWEVTLPTEEVPPELPEPALGINFARDDVSRRDWLSLVAVHSDSWLLSVAFYLGTRLNHNERKRLFGLINDLPTVFEIVTHNETIKDKPTVDSGSKSRASTERSSDGYEQDEDKCIEILCGCCGGNYNGDEFWIGCDICEWWYHGRCVLITPRKAETMKQYKCPSCSLRSGRP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1106 225 ProSitePatterns Zinc finger PHD-type signature. 172 218 IPR019786 -
Ssu3g1106 225 SMART PHD_3 171 219 IPR001965 -
Ssu3g1106 225 MobiDBLite consensus disorder prediction 139 158 - -
Ssu3g1106 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 219 IPR013083 -
Ssu3g1106 225 SUPERFAMILY FYVE/PHD zinc finger 161 222 IPR011011 -
Ssu3g1106 225 ProSiteProfiles Zinc finger PHD-type profile. 169 221 IPR019787 -
Ssu3g1106 225 CDD PHD_AL_plant 171 221 IPR044104 -
Ssu3g1106 225 Pfam PHD-finger 172 219 IPR019787 -
Ssu3g1106 225 PANTHER CPG BINDING PROTEIN 2 224 IPR045104 GO:0006355|GO:0042393
Ssu3g1106 225 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Ssu3g1106 225 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1106 Ssu-Chr3 26238446 26240728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1106 2 224 Alfin-like Transcription Factor Family AT5G05610 64.831 2.68e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g1106 Alfin 3.9e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1106 - - gmx:100819621 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1106 3 26238446 26240728 Ssu4g2375 4 58122619 58124575 PCT
Ssu4g2327 4 55995630 55996034 Ssu3g1106 3 26238446 26240728 PCT