Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1105 ATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTACAAGGACTATAGCGGCAGAAGAACCGCTGTTATTCGCGCTCTCACTCACGaCGTTGATGAATTTTACGGGCTCTGTGACCCAGATAAGGATAACTTGTGTCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCTGCAGAGGAAGTACCGCCGGAGCTCCCTGAGCCAGTTCTTGGAATCAATTTTGCCAGGGATGGCATGAACCGTAGCAACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGTTGCTTTCCGTGGCCTTTTACCTTGGAGCTCGTCTTAACCGCAACGAAAGGAATCGTTTATTTACTTTGGTCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGAGAGGAAACCAATTAAGGACAAGCCCACTATGGATAAGGGAAGCAAATCACGGGGAAGTGTCAAGAGATCTAGTGATGGGCAAGTTAAAAGCAATCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAGGATGAGCATAATGAAACACTTTGTGGAAGCTGCAATGGAAATTACAATGCAGATGAATTTTGGATCGGCTGTGATATATGTGAGAAGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCCGAGagcataaaacaatataaatgtcCATCATGCAACTTGAGGAGGGGCAGGCCCTAG 720 0.4556 MDMASSPRTVEEIYKDYSGRRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRSNWLSLVAVHSDSWLLSVAFYLGARLNRNERNRLFTLVNDLPSVFEVVTERKPIKDKPTMDKGSKSRGSVKRSSDGQVKSNPKFADEGYEEDEDEHNETLCGSCNGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCNLRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1105 239 Pfam PHD-finger 186 233 IPR019787 -
Ssu3g1105 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Ssu3g1105 239 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Ssu3g1105 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Ssu3g1105 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Ssu3g1105 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Ssu3g1105 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Ssu3g1105 239 MobiDBLite consensus disorder prediction 140 175 - -
Ssu3g1105 239 CDD PHD_AL_plant 185 235 IPR044104 -
Ssu3g1105 239 MobiDBLite consensus disorder prediction 140 154 - -
Ssu3g1105 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Ssu3g1105 239 SMART PHD_3 185 233 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1105 Ssu-Chr3 26218082 26221276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1105 4 238 Alfin-like Transcription Factor Family AT5G05610 74.153 7.77e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu3g1105 Alfin 3e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1105 - - gmx:100782478 452.21