Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1104 ATGGGTTCCAGTCGCTCACGTGGCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGTTTTGTGGAGGCTGTAAATAGACTTGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAAGTAATGAAAGCGATGGGTGTTTCAGAATTAAACATTTATCACGTCAAAAGCCATTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCTACAAGAGGAAAGCTTGAGAAGAGAAGCATATCAGATATACTGCCAAATTTTAGTTCTATATCTGCTCTTCAGCTGAAGGAAGTACTTCAAATGCAGACAGAGATGCAAAATCGCTTGAGTGATaaaacagagGCTCAGAGAAGtttgaagttaaaaattgaagCACAAGGAAAGTACTTGGAGAGAATTGGACAAAGTAATCATAGCAAAACAATCATTGAAAAAGCATGCAAGCCTTTTGTTGCTAAAATTGCACCTCTGCCTTCTCTCTCTGAGGAATCTAAATCTTTGGAAACACAGCCTGAGGAAGAGCATCAATCAGCCAAAAGGCAAAGGGTTGTAGAGGAGGGTGTTTTTACAACAAGTTTTGAACATGCATCATCCACCCCACCAGAATTCTACAACCAAACATGGAATCTTTCTTGGAGTCAGCTTGCAGCAGCTTGCCAATCACCTTTGGTGCCTAGTTTCTTATTATGA 714 0.4076 MGSSRSRGSATAKERLRWTQELHDRFVEAVNRLGGPDRATPKGILKVMKAMGVSELNIYHVKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISALQLKEVLQMQTEMQNRLSDKTEAQRSLKLKIEAQGKYLERIGQSNHSKTIIEKACKPFVAKIAPLPSLSEESKSLETQPEEEHQSAKRQRVVEEGVFTTSFEHASSTPPEFYNQTWNLSWSQLAAACQSPLVPSFLL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1104 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 204 - -
Ssu3g1104 237 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Ssu3g1104 237 Pfam MYB-CC type transfactor, LHEQLE motif 102 142 IPR025756 -
Ssu3g1104 237 MobiDBLite consensus disorder prediction 174 189 - -
Ssu3g1104 237 Gene3D - 12 73 - -
Ssu3g1104 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 204 IPR044848 GO:0003700
Ssu3g1104 237 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Ssu3g1104 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Ssu3g1104 237 MobiDBLite consensus disorder prediction 170 189 - -
Ssu3g1104 237 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1104 Ssu-Chr3 26211913 26216307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1104 3 141 G2-like Transcription Factor Family AT4G28610 48.276 6.12e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu3g1104 Myb_CC_LHEQLE 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1104 - - pvu:PHAVU_008G103100g 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1104 3 26211913 26216307 Ssu3g1104 3 26211913 26216307 ECH