Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1102 ATGGGCAACTGCTGCAGATCCCCGGCCGCCGTGGCGCGGGAGGACGTGAAATCGAGCTTCTCGAACGCGGACCACGGCAAGCGCGGAGGCGGCGACGCCGTGAAGCAGAAGGCGCCGATCACGGTGCTGGCCGGCGTGCCGAAGGAGAACATCGAGGACCGGTACCTGGTGGACCGCGAGCTCGGGCGCGGCGAGTTCGGCGTGACGTACCTGTGCATCGACCGCGACACCAGGGAGCTGCTGGCGTGCAAGAGCATCTCGAAGCGGAAGCTGCGGACCGCCGTGGACGTCGAGGACGTGCGCCGCGAGGTCGCCATCATGCGCCACCTGCCGGAGAGCCCCAGCATCGTGTCGCTCCGCGAGGCCTGCGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCGCCCGCGGACACTACACCGAGCGCGCCGCCGCCGCGGTCACACGGACGATCGTCGAGGTCGTGCAGCTCTGCCACAAGCACGGGGTCATTCACCGCGACCTCAAGCCGGAGAACTTTTTGTTCGCTAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTTGGCCTTTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCGGAGGTGCTCAAGCGGAGTTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTTTACATCTTACTGTGTGGCGTTCCCCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGTGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGCTCCAAAATGCTAAGAAGGCTCCTAATGTTCCACTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAGGATATGTTCAAGAAGAtggataatgataatgatggcATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCGAAATTTTGGGTCTCAACTTGCTGAGTCTGAAATTAAGATGCTTATTGAAGCTGTAGATAATAATGGTAAGGGATCACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGACGAGCATCTTCGCAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGATATATTGAACCAGATGAGCTACGGAATGCCTTGATGGAACACGGGGCAGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACGGACAAGGATGGTCGTATCAGCTATGATGAATTTGTTGCTATGATGAAAACTGGAACGGATTGGAGAAAAGCATCAAGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1590 0.5031 MGNCCRSPAAVAREDVKSSFSNADHGKRGGGDAVKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPESPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRSYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEIKMLIEAVDNNGKGSLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEHGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1102 529 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Ssu3g1102 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 510 - -
Ssu3g1102 529 CDD STKc_CAMK 54 312 - -
Ssu3g1102 529 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Ssu3g1102 529 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 510 - -
Ssu3g1102 529 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Ssu3g1102 529 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Ssu3g1102 529 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Ssu3g1102 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Ssu3g1102 529 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Ssu3g1102 529 Pfam Protein kinase domain 57 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1102 529 SUPERFAMILY Protein kinase-like (PK-like) 44 338 IPR011009 -
Ssu3g1102 529 SUPERFAMILY EF-hand 342 520 IPR011992 -
Ssu3g1102 529 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Ssu3g1102 529 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Ssu3g1102 529 SMART efh_1 396 424 IPR002048 GO:0005509
Ssu3g1102 529 SMART efh_1 432 460 IPR002048 GO:0005509
Ssu3g1102 529 SMART efh_1 468 496 IPR002048 GO:0005509
Ssu3g1102 529 SMART efh_1 360 388 IPR002048 GO:0005509
Ssu3g1102 529 Gene3D - 322 497 - -
Ssu3g1102 529 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1102 529 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Ssu3g1102 529 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1102 529 CDD EFh 432 494 IPR002048 GO:0005509
Ssu3g1102 529 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Ssu3g1102 529 Pfam EF-hand domain pair 359 419 IPR002048 GO:0005509
Ssu3g1102 529 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1102 Ssu-Chr3 26119405 26127074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1102 32 526 EF-hand Containing Proteins AT1G74740 72.727 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu3g1102 Pkinase 6.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1102 K13412 - gmx:100783922 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1102 3 26119405 26127074 Ssu3g1102 3 26119405 26127074 ECH