Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1099 ATGGCTAAACCAAGTAATGCAAAACCTGGGTGTTTCTCTGACTTCTTTTACCTTCCCTTTTGTGCTGGGAATGGAAATAGTTCTCCAATGCACCCTTCTAACCACATTACAAAACCACATGCAACAGAAGTGGTGCACACAAATAAAGATGCAAATGCAATGGCTAATGCAGCTAAGCCAGGAGTGGTGGCAAGGCTAATGGGGCTTGATTCACTGCCAAGTACCAATTTGGTACCAAAAGGAAACACAAACACCCCAGATTTAGTTCCAAGAAGTAGGTCAGTGAACTTTGTGGATTACTTGCTCAAGTTTGACACAAGCCAAACCAACCAAGTGAAGACCTCAGCATCATTCAGAGAGGTTCCTGCATTGTTTCAGCACAAAAACCATGACCTCTTTGTGCTCTACTGGGACAGTGGGAGTGAAGATCATGAAGTTGGATCCCTTTTGAGGAAACAAGAAATGGGGTTGGCAGAATCTAGACAGAGAAAGAAGCAGGGGAGCAATAACAAGGAGATTGTTGCTGTGACAAAGGAGAGGAATCACGCCAAGAGAAACAAGATTTCCAAGTTCGAGAATGAGCCTAGAGTGGTTCCTGTTAAGCATGGTTCAAAGGTTCGAAATTACAATGAAGCTAAAGTTTTGGCACCAGTTTCTGCACGCTCTAAGAATTGtagtaatagaaaaaaaggaGGCATTGGTAGTGGTAGTGGGTTAAGATCAAGCTCCACATCGCCAAGTAAGCAGAAGAAAGTGTTCTCTGAACCAAAACGCGcgaaaaaaacaagaaaaaaacagTCGACAAAGAAGATAGAGACTGAATGTAGCTCAGAGAATTTCAGTCCAATTTCAGTCCTAAATGACTATGACTGTTCATTTCTTTATGGACCTGATTTTCCAGattacACGAGCCCCTTAATGTCAAAGACAAAGTGGGAATCTTCAGAGCTACTGTTCTTGGGTGATAATGTTGGAGACAGAGCAAGCAAAGAGAAAGGCTATTCCTACCCTGACATCAACAGGAAAGAAGAGTATTTATCAGAATTAATGGTGAAGCTTCGCAACCTAACAGAAAATGATATAAGAGAATCAGATTGCACGGGAAAGCGCATGTGTGAGAGTGAAAGTTATAAGGAAATTTGTTTGGAGTAtgaacataaaatttttgacattttactaGACGAGatGAACGTCTATAAGATATCCTTTACGTGA 1215 0.3967 MAKPSNAKPGCFSDFFYLPFCAGNGNSSPMHPSNHITKPHATEVVHTNKDANAMANAAKPGVVARLMGLDSLPSTNLVPKGNTNTPDLVPRSRSVNFVDYLLKFDTSQTNQVKTSASFREVPALFQHKNHDLFVLYWDSGSEDHEVGSLLRKQEMGLAESRQRKKQGSNNKEIVAVTKERNHAKRNKISKFENEPRVVPVKHGSKVRNYNEAKVLAPVSARSKNCSNRKKGGIGSGSGLRSSSTSPSKQKKVFSEPKRAKKTRKKQSTKKIETECSSENFSPISVLNDYDCSFLYGPDFPDYTSPLMSKTKWESSELLFLGDNVGDRASKEKGYSYPDINRKEEYLSELMVKLRNLTENDIRESDCTGKRMCESESYKEICLEYEHKIFDILLDEMNVYKISFT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1099 404 MobiDBLite consensus disorder prediction 220 270 - -
Ssu3g1099 404 Pfam DUF761-associated sequence motif 60 76 IPR032795 -
Ssu3g1099 404 Coils Coil 339 359 - -
Ssu3g1099 404 MobiDBLite consensus disorder prediction 220 250 - -
Ssu3g1099 404 PANTHER ALC-INTERACTING PROTEIN 1 1 396 - -
Ssu3g1099 404 MobiDBLite consensus disorder prediction 157 196 - -
Ssu3g1099 404 MobiDBLite consensus disorder prediction 175 196 - -
Ssu3g1099 404 PANTHER OS05G0128300 PROTEIN 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1099 Ssu-Chr3 26023680 26026194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1099 1 396 TRM (TON1 Recruiting Motif) Superfamily AT5G01370 24.222 2.17e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1099 - - gmx:100775965 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1099 3 26023680 26026194 Ssu3g1099 3 26023680 26026194 ECH