Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1095 ATGACTGATGCAAACGTAGCTTCATTTGAGGCATTTCTCCAAGGGTGGATGGTGCGCCAAAGAGACTACCTTGATGAGCTTCTCTCAGCTCAGCAACACTATCGGGAGATGCAGGATGCTGATATAAGGCAATTGATCAATAGGGTCCTCTGCCACTATGGGCAATACTTTGAAGAGAAATCAAGGATTGCCCACCACAATATTCTTCTTGTTTTCTCACCACCATGGTTCAGTTCATTAGAAAGAGCCTTTTATTGGGTGGGGGGGTTCAAGCCCGGAATGGCTTTTCAGGTTGTGAACACAGCTTTGGAGGACTTGTCAGAAGAGCAAAGGGAAAGGTTGAGTCAGCTCAATCAAGAGACCAAGGTAAAGGAGAGAGCCCTCAATGACGAGTTGGCCAAGCTTCATGAGAGTGTGGCGGCTCCACCGCTGGTGGACATGGCCAGGAGCCATGGCAGGGTGTGTTTCAGCAGGTCCTTCATGGCAGAGGAGGGTTCAGCTCCAAGCACTTTCAAAGAGACATTGGAGAATCTGGTGGCAAATGCAGATGCGTTGAGGACAAACACAGCTTTGAAGATAGTGCAGATACTGAGACCTGCTCAGATTGTCACATTCCTGGTTACTGTGGCCGAGTTTCAGCTCAGGATCAGGTCTTGGGGCTCTGATAAGGATGCCCAAAATGGAGGCCTAGGGTGA 696 0.4928 MTDANVASFEAFLQGWMVRQRDYLDELLSAQQHYREMQDADIRQLINRVLCHYGQYFEEKSRIAHHNILLVFSPPWFSSLERAFYWVGGFKPGMAFQVVNTALEDLSEEQRERLSQLNQETKVKERALNDELAKLHESVAAPPLVDMARSHGRVCFSRSFMAEEGSAPSTFKETLENLVANADALRTNTALKIVQILRPAQIVTFLVTVAEFQLRIRSWGSDKDAQNGGLG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1095 231 ProSiteProfiles DOG1 domain profile. 6 226 IPR025422 GO:0006351|GO:0043565
Ssu3g1095 231 PANTHER - 5 227 - -
Ssu3g1095 231 PANTHER TRANSCRIPTION FACTOR HBP-1B(C38)-LIKE ISOFORM X1 5 227 - -
Ssu3g1095 231 Pfam Seed dormancy control 24 100 IPR025422 GO:0006351|GO:0043565
Ssu3g1095 231 Coils Coil 100 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1095 Ssu-Chr3 25968366 25969061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1095 3 221 Calmodulin-binding Proteins AT1G77920 29.224 7.03e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1095 - - gmx:100780874 409.068