Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1080 ATGCGTGGTGACACACCAAACAGCCACGTGTACTTAGCGGCCTTAACCTCGAAGCATCTGGACTCTCTCCCGCGAACTCTATTAAGCGTCGTTCCGTCACCGTCACGGTTATCTCAGATTACTAACGTTCCCATTTCCGTTTTCAAATTCCCTCCGGCGACATATTCGGATCGGAACATGAGGACCCGTTTTACCACCACACGGGTCGTGTTCTTCGTGGCCACGCTCTGTTTCCTCGCAAGCCTCTTAGAACTATTGGAAGCCAAAACCATCGATCCCTACAAGGTTCTCGGGGTTGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTTCACAAaCTATCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTTCTCAGATCAATAATGCATATGAGATTTTATCTGacgaagagaagagaaagaattaTGACATGTATGGAGATGAGAAAGGAAATCCTGGATTTCAAGGTGGCCATCCTGGAGGTCAGGATGGATATACTTATTTTACAGGGGGTGGTCCTGGACAAAGCCATTTTAACTTCAAACCTGGGGGGGATTGGCAGGGTATGGGTGGGCAGGGAGGATCTAAGTCATTCTCCTTTTCCTTTGGTGGCTCAGGCGATTCAAATCCTTTTGGATTTGGCTTGGGTGATATTTTTGGCAGTTTTtttggtggtggaggtggtgggAGACAGTTTGGCGGTTTTGGCAATTCAGCTAATTCTCAATCTGCGTCCGAGAGTTCTCCCAAAAGTCTTAGAGCTATAAATTCACATATCTACacgaaagaaatagaaaatgcaGGGATGACTTGGCTTTTGTTATCTTATATACCCTCATCGAAGGAGATCCAATACTTTGAATCCACTATAGAGGAGGTTGCCAGTTCATTGCTGGGAGCTTTGAagGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTTGGCATATATCCGCGCAGAGCTCCAAGGCTTTTTGCTTTTTCTTACAAGGAGAATGAAAAAGGTTCTTTAGTGGAGTACAGTGGAGACTTAGCTGTTAAGAATTTGAAGGCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGAACCGACTTGAGTCATCTTGATCAATCCAGCACTACTGGAAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCTGTAATATGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCAGTGATGCAGAGGTTCATGATGTTTCTGATCCAAGGGTGAAAACACTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAGCGTGTTCTGAAAACTGGGATTTCTGTGAAAGATTTAAAATCTGCAGTTATCGATCTTAGTAACATACtcgataattttgaaaaagtaagtAAAAAGGAAGCATCACGTCAGGCCAAGAAGGCGCAAACTGATTCAGACGAGGGACGCGTACCATTACTTTCTCGGTCAAACTTTGAGGCTCTTTGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGGGAAAAGCTAGAATCAATCCTCTCTTTGGTATGTACACATTTCATTTCACTTGCTAGTTTAATGGGTatgtatgtaattttattctcaGAGGGAGCACTGTTACAAAATTTTCAGGTCTCTCAAAAATCTTTGTCAAGGCGACCAAATCATGGAGCCAGCAGCTCTAGGGACTCGATTTCCTATGCTCTCTTAGATGCTGCAAAGCAACAGTCATTTCTTAATGCATTTGACAAAACAGGTTATAAATcgttaaataagtttttgattGCTTACAAACATCGGAGAGGAAAGTACAGTGTATATACGGGAGAAATGACAATAGAGGAGATAGAGAATTTCATCAGTTCTGTTCTCAGTGGAGATATACCCTTCAGAGAAACACGTGGGAAGCCTGTCCTCGAGCATTAG 2010 0.4109 MRGDTPNSHVYLAALTSKHLDSLPRTLLSVVPSPSRLSQITNVPISVFKFPPATYSDRNMRTRFTTTRVVFFVATLCFLASLLELLEAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFSQINNAYEILSDEEKRKNYDMYGDEKGNPGFQGGHPGGQDGYTYFTGGGPGQSHFNFKPGGDWQGMGGQGGSKSFSFSFGGSGDSNPFGFGLGDIFGSFFGGGGGGRQFGGFGNSANSQSASESSPKSLRAINSHIYTKEIENAGMTWLLLSYIPSSKEIQYFESTIEEVASSLLGALKVGSINCEKEVSFCKELGIYPRRAPRLFAFSYKENEKGSLVEYSGDLAVKNLKAFCQEHLPRFSKRTDLSHLDQSSTTGKLPRVLLLSTKKDTPVIWRVLSGLYHKRITFSDAEVHDVSDPRVKTLGVDALPAIVGWLPNGEKRVLKTGISVKDLKSAVIDLSNILDNFEKVSKKEASRQAKKAQTDSDEGRVPLLSRSNFEALCGEKTPVCIIGAFRSSKAREKLESILSLVCTHFISLASLMGMYVILFSEGALLQNFQVSQKSLSRRPNHGASSSRDSISYALLDAAKQQSFLNAFDKTGYKSLNKFLIAYKHRRGKYSVYTGEMTIEEIENFISSVLSGDIPFRETRGKPVLEH 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1080 669 SUPERFAMILY Chaperone J-domain 88 188 IPR036869 -
Ssu3g1080 669 CDD DnaJ 92 145 IPR001623 -
Ssu3g1080 669 Coils Coil 126 146 - -
Ssu3g1080 669 Pfam DnaJ domain 92 153 IPR001623 -
Ssu3g1080 669 PANTHER DNAJ PROTEIN ERDJ3A 67 668 - -
Ssu3g1080 669 SUPERFAMILY Thioredoxin-like 266 372 IPR036249 -
Ssu3g1080 669 Gene3D DnaJ domain 89 243 IPR036869 -
Ssu3g1080 669 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Ssu3g1080 669 ProSiteProfiles dnaJ domain profile. 92 156 IPR001623 -
Ssu3g1080 669 Gene3D Glutaredoxin 247 370 - -
Ssu3g1080 669 PANTHER DNAJ PROTEIN ERDJ3A 67 668 - -
Ssu3g1080 669 PRINTS DnaJ domain signature 148 167 IPR001623 -
Ssu3g1080 669 PRINTS DnaJ domain signature 94 112 IPR001623 -
Ssu3g1080 669 PRINTS DnaJ domain signature 128 148 IPR001623 -
Ssu3g1080 669 PRINTS DnaJ domain signature 112 127 IPR001623 -
Ssu3g1080 669 SMART dnaj_3 91 148 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1080 Ssu-Chr3 25450420 25454031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1080 94 155 C2H2 Transcription Factor Family AT1G74250 42.647 7.04e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1080 3 25450420 25454031 Ssu3g1080 3 25450420 25454031 ECH