Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1078 ATGATCAACAAGGATGCTTTCTTTGGCAGCAGCTTCGTGATCTCCATCTTTCTCGTTCCCATTTCCAGTTCAAACCCGAGACTATTGATGACTATACCTTTTTCAATTGTTCACCAGTGGAAAGAAATGAATTTTCAGTATAATATTCCATGCCTAAGCAGCTCAACCTATCAAGTATATGCCATCCCATCCAGAAAAGATATTAGAAAGTTGTCCTTAGCACTGTGCACCAAAATGTATTACGCTTCATCCCTTTTATCCCGAACAGTTGGTGACACTTATCTTTTGCTGTGGTCAGAGCCAACGTGTAAACATTGCGAATCGAAAGGGAAATCATGCCGGTTGAAGGATAATGGTTCCAACAACCAAAGTTTGGAAACTGAATGTTTTGGTAAAGGTACATCATCAAATTCAAAGGCAATAGTAATTACAGGAGCAACTCTAGGCCCGTTATCTTTTGCAGTTCTCGCTGTTGCAGTTATTTCCGTTTACATCTCTTACAGAATACGAATGGCTAATCAGGCAATGATGGAAAAGTTTTTGCAAGAGTACAAAGCTTTCACGTCTACAAGATATTCTTACAACGAActtaagaaaattacaaatcactTTGCAGAGAGATTAGGAGAAGGAGCATATGGAACCGTATTCAAAGGAAAGATTTCCGAAGATGTCACCGTTGCAGTGAAAATCCTCAAAGTTTCCGGCGGAAACGGGGAAGAGTTCATAACCGAAGTTGGAACGCTATCTAGAATCCATCACGTAAACGTGGTTCGGCTTGTTGGCTACTGTGCCGACGGTTTAAGAAGAGCTCTTATTTACGAGTTCTCACCAAATGGTTCACTTGACAGGTTCATAACTTCACCGGACAACACCAACCATTTCCTAGGGTGGAGAAAGTTGGAGGCAATTGCTATGGGCATGGCTAAAGGAATTGAGTACCTTCACCAAGGATGTGACCAACGCATCCTCCATTTCGATCTGAAACCTCAAAACATTTTGCTAGATCACAACTTCACTCCCAAAATCTCCGACTTTGGCTTGGCTAAGCTCTGCGCCAAGGCGCAAAGCGCGGTGTCGATTTCAACAGTTAAAGGGACCATGGGCTACATTGCGCCTGAAGTTTTCTCTCGGTGTTTTGGAAGCGTGTCTTGCAAGTCAGATGTTTACAGTTTTGGAATGATGCTGCTGGAAATGATAGGGGGGAGGAAGATCAGTGAAGTCACAGAAGGAAATAGAAGTAGTGATGAGTGTTACCCGACTTGGATCTATAATCTCCTGGAAGAAAGAGATGACATCAGAATTTGTATTGAGGCAGAAGAGGATGCTGAAATTGCAAAGAAGCTCGCGATTGTGGGGCTCTGGTGCATTCAGTGGCACCCTGTGGATCGTGTGTCCATGACTGTTGCGATTCAGATGTTGGAAAGCGAAGGGCAAGGCTTAACAGTGCCTCCCAATCCTTTTACTGCCCCAGTTCCAGCAACAGAAGATACGAACATCTCTAGGAGGTGCGTTACTCGAAATCTGGAAGTAATCCAAGAAGAGGAGTAG 1551 0.4307 MINKDAFFGSSFVISIFLVPISSSNPRLLMTIPFSIVHQWKEMNFQYNIPCLSSSTYQVYAIPSRKDIRKLSLALCTKMYYASSLLSRTVGDTYLLLWSEPTCKHCESKGKSCRLKDNGSNNQSLETECFGKGTSSNSKAIVITGATLGPLSFAVLAVAVISVYISYRIRMANQAMMEKFLQEYKAFTSTRYSYNELKKITNHFAERLGEGAYGTVFKGKISEDVTVAVKILKVSGGNGEEFITEVGTLSRIHHVNVVRLVGYCADGLRRALIYEFSPNGSLDRFITSPDNTNHFLGWRKLEAIAMGMAKGIEYLHQGCDQRILHFDLKPQNILLDHNFTPKISDFGLAKLCAKAQSAVSISTVKGTMGYIAPEVFSRCFGSVSCKSDVYSFGMMLLEMIGGRKISEVTEGNRSSDECYPTWIYNLLEERDDIRICIEAEEDAEIAKKLAIVGLWCIQWHPVDRVSMTVAIQMLESEGQGLTVPPNPFTAPVPATEDTNISRRCVTRNLEVIQEEE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1078 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Ssu3g1078 516 PANTHER RECEPTOR-LIKE KINASE 36 515 - -
Ssu3g1078 516 Gene3D Transferase(Phosphotransferase) domain 1 277 481 - -
Ssu3g1078 516 SUPERFAMILY Protein kinase-like (PK-like) 182 475 IPR011009 -
Ssu3g1078 516 Pfam Protein kinase domain 205 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1078 516 Gene3D Phosphorylase Kinase; domain 1 174 276 - -
Ssu3g1078 516 ProSitePatterns Protein kinases ATP-binding region signature. 208 230 IPR017441 GO:0005524
Ssu3g1078 516 SMART serkin_6 202 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1078 516 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 515 IPR045874 GO:0004672
Ssu3g1078 516 ProSiteProfiles Protein kinase domain profile. 202 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1078 Ssu-Chr3 25412033 25414096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1078 103 493 Receptor kinase-like Gene Family AT1G66910 43.276 2.60e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu3g1078 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1078 - - ccaj:109815397 622.854