Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1077 ATGTCCCTTTACTGGTCTTCGTTTTTGCTGCTTCTCTTATTCTTTGAAGCCTGTCATGCGGCCTGTGTTCCTTCTTCCTGTGGCAGCATCCATAACATACGCTACCCTTTCTTGCTATACGATGATCCAAAAGACTGCGGTGACTTCAGGTACTATTTATCCTGCGCAAACAACCTCACCGTGCTATACTTAGGTTCAAACAAATACTATGTGAAGGCAATCGATTACACCAACTATACAATCCGAGTGGTAGACTCAAATATTAAGGAGAATAGTTACTCATTTGTTCCTCGTTATTCTTTGGGTGCCTTTAACTTCAGCTCCAAATATGATTCCTATAGCCACGATCAGACCCGGTCCTATTTATTGAATTCATATTGGTTGCCAATCATACATACAAAAACTTACGAATTGTCAAAGCTTGTAACATATTTGAGTACTGAAAGCTCAATAAATTTGTCAAGGTACGTCGAAATTGGTGGGTGCATGAATGATTCGCGTTATTGGCCATGGCAAAACCAGAAAAGGAGGCTTTATATTAGCATTGGAGGCAATTATTTAAGGGATTTGAGGCTGATTGAGTATCGTGTAGAAATGATATACATGACGTCGTGGCCTGGCGCTTTTAAAGATCACCTAAGCACTTCCTGCTCTGATATTCGAAATGGATTGGAATATGGGATTGAGCTTTCATGGCTGGAAGGAGTCTGCGCGTCCACAGAACCCGGTTTCCAACCACTGCTTGAATCCAACGATATTTGTAGCCGTGCCTCGCGTTACGCAGAAGGACGATTTGattttatgaaaaacagtTTAAGAGGACTATATGAGTTGCGCTATGGCCATGAATTGCTGACGACATCTGTTGATGGTTTTACTATAACGGCACCATATGAGCTAGGACTACTCACCGCACGGCATGTTCTCCCATCATACCTAATCTTCAGAATTGTGTCTGGAATATCATTTGTGGTCGGTATTTTGATCACCGTATTTCGTAGAAGACATTTATCAACATACGAAAATATTGAAGCTTTTCTGCAAGATAATAGCCTTATGCCTATAAGGTATTCTTATTCAGAAATTGTGAGTATGACCGGAGGTTTTAAGGACAAGTTGGGTCAAGGGGGCTTTGGATCTGTGTACAAAGGGAAGCTACGCAGCGGGCCTTATGCTGCTATAAAGATGTTGGAAAATTCTAACACCAATGGCCAAGATTTTATTAGTGAAGTCGCAACCATAGGAAGGATACACCATGTGAATGTGCTTAGGCTTATTGGCTATTGTGTCGAGGGATCCAAGCGTGCACTTGTTTATGAATTCATGCCCTCTGGCTCTcttgacaagtatatattttctaaagaaGAAAGTATCCCCTTAAGTCATGatcaaatatatcaaatatccCTTAGAGTGGCCCGTGGGATTGCCTATTTGCATCAAGGGTGTGACATGCAAATTCTACATTTTGACATCAAGCCCTACAACATTCTTCTTGATGAAAACTTCATCCCAAAGATTTCAGATTTTGGACTTGCAAAGCTGTATCCGATAGATAATAGCGTCATCACTTTGACTGCAGCAAGAGGCACAATTGGCTACATGGCTCCAGAATTGTTCTACAAGAATATTGGAGCAGTCTCCTTCAAGGCTGATGTTTACAGCTTTGGAATGCTGTTGATGGAAATGGCACATAGACAGAAGAATGTGAATCCACATGCAGAAAACTCAAGCCAAATTTTCTTTCCCACTTGGATTTACGATCAATTTGATAAAGGAGAAGACATAGAATTGGATGATAGCACAGAGGACGAAAAGAATACAGTGAAGAAGATGATCATAATTGCACTATGGTGCATTCAGTTAAAACCCTGTGACCGTCCTTCAATGAAAAAAGTAGTAGAGATGCTAGAAGGGGAACTTGATATCCTAGAAATGCCTCCAAAGCCTTTATTGTATCCAACTAAAGAGCCTGTTGAGGTTCCAAGAATCTACTCCGGTCAAACCTCTTCAGATGACTACACAAGTGGTGAAAGTTATTCTGATGAAAACACTGCGAATATTACCCCAGAGTTGAACATCCAGTGA 2088 0.4013 MSLYWSSFLLLLLFFEACHAACVPSSCGSIHNIRYPFLLYDDPKDCGDFRYYLSCANNLTVLYLGSNKYYVKAIDYTNYTIRVVDSNIKENSYSFVPRYSLGAFNFSSKYDSYSHDQTRSYLLNSYWLPIIHTKTYELSKLVTYLSTESSINLSRYVEIGGCMNDSRYWPWQNQKRRLYISIGGNYLRDLRLIEYRVEMIYMTSWPGAFKDHLSTSCSDIRNGLEYGIELSWLEGVCASTEPGFQPLLESNDICSRASRYAEGRFDFMKNSLRGLYELRYGHELLTTSVDGFTITAPYELGLLTARHVLPSYLIFRIVSGISFVVGILITVFRRRHLSTYENIEAFLQDNSLMPIRYSYSEIVSMTGGFKDKLGQGGFGSVYKGKLRSGPYAAIKMLENSNTNGQDFISEVATIGRIHHVNVLRLIGYCVEGSKRALVYEFMPSGSLDKYIFSKEESIPLSHDQIYQISLRVARGIAYLHQGCDMQILHFDIKPYNILLDENFIPKISDFGLAKLYPIDNSVITLTAARGTIGYMAPELFYKNIGAVSFKADVYSFGMLLMEMAHRQKNVNPHAENSSQIFFPTWIYDQFDKGEDIELDDSTEDEKNTVKKMIIIALWCIQLKPCDRPSMKKVVEMLEGELDILEMPPKPLLYPTKEPVEVPRIYSGQTSSDDYTSGESYSDENTANITPELNIQ 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1077 695 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 296 664 - -
Ssu3g1077 695 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 238 - -
Ssu3g1077 695 MobiDBLite consensus disorder prediction 664 695 - -
Ssu3g1077 695 Pfam Protein kinase domain 370 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1077 695 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Ssu3g1077 695 Gene3D Phosphorylase Kinase; domain 1 343 441 - -
Ssu3g1077 695 ProSiteProfiles Protein kinase domain profile. 367 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1077 695 Gene3D Transferase(Phosphotransferase) domain 1 442 650 - -
Ssu3g1077 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Ssu3g1077 695 SUPERFAMILY Protein kinase-like (PK-like) 352 638 IPR011009 -
Ssu3g1077 695 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Ssu3g1077 695 SMART serkin_6 367 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1077 695 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 664 IPR045874 GO:0004672
Ssu3g1077 695 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 238 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1077 Ssu-Chr3 25388521 25399460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1077 341 659 Receptor kinase-like Gene Family AT5G38280 49.691 3.25e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu3g1077 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1077 - - ccaj:109815398 725.702