Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1071 ATGGAGTGCATCAACCCTACCTCTCCTGAAGGGTCATCTTCCAAGTCCAACAAGAGCAAGGAGAAAAAGGGTGCGAAGAAAAGCAACAAGGGAGTGAAGCTTTCCACTGATCCACAAAGCGTGGCAGCCAGAGAGAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACGGTTTCTATGTTGGAGGAAGCCATTCACTACGTGAAGTTCCTCAAGACCCAGATTTGGCTCCACCAAGCATTCATAAACTTTGTAGACGTTGACCACGAGTCTCCCCTGTACCTCCCCGCAGAGTATAATTTCTCCTATGAACACACCATTTCCCTTCAGCAAAACCCTTCTTCAGTTTCAGTGCATTCTCAGCAGAGTTTACCGCAGCTACCACTAGCTCAGTGCTACTTCCAAGGTGAAGAAGATTGTAACACCTTTGATGCCACTATGAAATATTGGTCAGCTTAG 495 0.4768 MECINPTSPEGSSSKSNKSKEKKGAKKSNKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQAFINFVDVDHESPLYLPAEYNFSYEHTISLQQNPSSVSVHSQQSLPQLPLAQCYFQGEEDCNTFDATMKYWSA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1071 164 CDD bHLH_AtIND_like 35 91 - -
Ssu3g1071 164 MobiDBLite consensus disorder prediction 1 46 - -
Ssu3g1071 164 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 15 150 - -
Ssu3g1071 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 96 IPR036638 GO:0046983
Ssu3g1071 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 150 IPR045843 GO:0003700|GO:0006355
Ssu3g1071 164 Gene3D - 38 91 IPR036638 GO:0046983
Ssu3g1071 164 SMART finulus 40 89 IPR011598 GO:0046983
Ssu3g1071 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Ssu3g1071 164 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1071 Ssu-Chr3 25061214 25061708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1071 26 109 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.826 3.73e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g1071 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1071 - - gmx:113000114 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1071 3 25061214 25061708 Ssu3g1071 3 25061214 25061708 ECH