Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1069 ATGGCCACTCCCTCGGCCTACCAAGAGCACCTTCCCGCATCACCCGAATGGTTGAACAAAGGGGACAACGCGTGGCAGTTGACAGCAGCGACTCTGGTTGGTCTTCAGAGCATGCCGGGTCTGGTGATCCTCTACGCGAGCATAGTTAAGAAAAAATGGGCGGTGAACTCGGCCTTCATGGCTCTCTATGCCTTTGCGGCCGTTCTCATATGTTGGGTGCTCGTGTGTTACCGCATGGCCTTTGGGGAGCAACTTTTACCCTTCTGGGGCAAGGGTGCCCCGGCACTGGGCCAAAAGTTCCTCACAAAGCGGGCCCTGGTGATTGAAACGGCCCACCACTACAACAACGGCACCGTTGAGACCCCTGCTGAACAGCCCTTTTACCCCATGGCTTCGCTTGTCTATTTCCAGTTCACTTTTGCCGCTATTACGCTCATCTTGCTGGCTGGCTCTGTCCTTGGCCGGATGAACATCAAGGCTTGGATGGCTTTTGTTCCCCTTTGGCTCATCTTCTCTTACACCGTTGGAGCCTTCAGTCTTTGGGGTGGTGGCTTTCTCTACCAATGGGGGGTCATCGATTACTCTGGTGGCTATGTCATCCACCTTTCCTCTGGAATCGGCGGCTTAACTGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCACCAAACAATGTGCTGCTTATGCTTGCGGGTGCTGGGTTATTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATACGCTGCAAACATTGCATCTTCAATTGCGGTGTTGAACACAAACATTTGTGCAGCCACGAGCCTCCTTGTGTGGACCACTTTGGATGTCATTTTCTTCGGGAAGCCTTCGGTGATTGGAGCCGTGCAGGGCATGATGACCGGCCTTGTATGCATCACCCCAGGAGCAGGACTAGTGCAATCGTGGGCGGCTATAGTGATGGGAATATTATCTGGGAGCATTCCGTGGGTGACCATGATGATTTTGCATAAAAAGTCAAGCTTATTGCAAAAGGTGGATGACACCCTTGGTGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGTCTCCTCACAGGTCTATTAGCAGAACCAGCCCTTTGTAGATTGCTATTGCCAGTTACCAACTCAAGGGGTGCATTTTatggtggaggtggtggtgtGCAATTTTTGAAGCAATTGGTGGCAGCCTTGTTTGTTATTGGATGGAACTTGGTGTCCACCACCATCATTCTCCTTGTCATACAATTGTTCATACCCTTGAGGATGCCGGACGACCAGCTGGAAATCGGCGACGACGCCGTCCATGGTGAGGAAGCTTATGCCCTTTGGGGTGATGGAGAAAGATATGACCCTACTAGGCATGGTTCCTTGCACACAAACAACTCTGCCGTGTCACCTTATGTTACTGGTGCAAGAGGTGTGACTATAAACTTATGA 1461 0.5092 MATPSAYQEHLPASPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEQLLPFWGKGAPALGQKFLTKRALVIETAHHYNNGTVETPAEQPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIGGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGGGGVQFLKQLVAALFVIGWNLVSTTIILLVIQLFIPLRMPDDQLEIGDDAVHGEEAYALWGDGERYDPTRHGSLHTNNSAVSPYVTGARGVTINL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1069 486 PANTHER AMMONIUM TRANSPORTER 1 483 - -
Ssu3g1069 486 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu3g1069 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu3g1069 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
Ssu3g1069 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Ssu3g1069 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Ssu3g1069 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Ssu3g1069 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Ssu3g1069 486 PANTHER AMMONIUM TRANSPORTER MEP2 1 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu3g1069 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu3g1069 486 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Ssu3g1069 486 SUPERFAMILY Ammonium transporter 17 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1069 Ssu-Chr3 25036773 25040691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1069 130 486 Inorganic Solute Cotransporters AT2G38290 77.437 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1069 K03320 - gmx:100790119 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1069 3 25036773 25040691 Ssu3g1069 3 25036773 25040691 ECH