Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1068 ATGGAAGAAGAAAGACATGGCTCGGAATGTTCCAAGACAAGCCCTTCTAACGAAGAAGGTTGTGAAGAAAGTGAGACCAATGAAGATGACAGTAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGACAAGAAGACAACAGTGAGGCCTTATGTAAGATCCAAGTTGCCTAGGCTACGTTGGACTCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGAAACAAATCAAGTATTTGCTGATCCTAGGCTCCTTGTAGAAACTGGAGACAGAAATGTTTATAACCTAAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAATCTTCAGCATACAGaTATGGTTATGGAGATGCTTCTCTCGCTATCTATGAAAACATGGTGCACAGGCCTTTCATGAATAGGAGTTCATTAGATGAATCTGGAGCTGAATTTTGTGTCAGCAGATTGACTGAGAGAATCCATGGGACCAATAGTAACATCAATTGGACTCATAATATGTTCCAAGTTGATTCTTCCAGTTTTAATGAACTGTCAACAAGTAAAGCCCATGAACCAAAACATAAATTCTTCTCATCTGGTTGCCATGATTCTTTATGCACACAAATCAAGATGAGCCAGGTTGATCTACATCAATCAACTCAACTGCAGCCAAGTGCACAAGAGCTCATGCCTAATAATAAGATGGCTACAAATCCAGTGGAACTGAAGACCTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGAATCTGtcacttaaattaaattcaagggTCAGTGCTGAGAACCAAGGAAGCATGGTGGACCATGAAGTTGATAGCAATCTATCACTCTCTTTGTGTTCTCAATCCTCCTCCTCTTATCTTAGCAGCAGGTTGAAAAAAGCACAAGATCAAACTAAGGAGCAAGGGAAAAGAGCCACTGCTCTGGATCTGACTATATGA 1089 0.4013 MEEERHGSECSKTSPSNEEGCEESETNEDDSKQNNNGGSSSNSTVEENDKKTTVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVETNQVFADPRLLVETGDRNVYNLSQLPMLQGYNPSQSSAYRYGYGDASLAIYENMVHRPFMNRSSLDESGAEFCVSRLTERIHGTNSNINWTHNMFQVDSSSFNELSTSKAHEPKHKFFSSGCHDSLCTQIKMSQVDLHQSTQLQPSAQELMPNNKMATNPVELKTLKRKASDIDLDLNLSLKLNSRVSAENQGSMVDHEVDSNLSLSLCSQSSSSYLSSRLKKAQDQTKEQGKRATALDLTI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1068 362 MobiDBLite consensus disorder prediction 1 19 - -
Ssu3g1068 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 362 IPR044848 GO:0003700
Ssu3g1068 362 MobiDBLite consensus disorder prediction 1 57 - -
Ssu3g1068 362 Pfam Myb-like DNA-binding domain 65 115 IPR001005 -
Ssu3g1068 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 119 IPR017930 -
Ssu3g1068 362 PANTHER - 7 362 - -
Ssu3g1068 362 MobiDBLite consensus disorder prediction 31 47 - -
Ssu3g1068 362 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 63 118 IPR006447 GO:0003677
Ssu3g1068 362 MobiDBLite consensus disorder prediction 340 362 - -
Ssu3g1068 362 Gene3D - 62 119 - -
Ssu3g1068 362 SUPERFAMILY Homeodomain-like 62 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1068 Ssu-Chr3 25025425 25026976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1068 54 120 G2-like Transcription Factor Family AT2G42660 82.090 8.99e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu3g1068 Myb_DNA-binding 1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1068 3 25025425 25026976 Ssu4g2412 4 60085133 60086657 ECH
Ssu3g1068 3 25025425 25026976 Ssu3g1068 3 25025425 25026976 ECH