Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1064 ATGATGCAGCCAGAGATTCTTCACTCCCCATGGTCATTCTTGGAAGACATGAACTCAACTTTTGATCAAGATGTTGAGTCCTATGGCTTCACCATGTATGACCATGTTGGTGATTGTGGACCCTATGGCTTCGCTATGGATGACCATGTTGGTGATTGTGGACTGAGCACTCTACTGAGCACTCTAGAGGACACTGCTTCTGAAGTTTGTTCCATTCCTTTTCCTTCCTCCCCCATATTTCCAAATGACCATGTCCAATACCCAATCAATGAAGAAACCTTGCAACTTCCATCACTGATGGAATTGGATGATTTTGATTCCATCCTGAGTGCTCAAATTATTAGTACTCAAGGCCATGGAGAAAGTGAAGGGAACTTCCCTTCACAGAATTTGTCCAGTGAGGTGGAAAATGCATGGAGTCCTACCCCATCTGTGAGGTCAGAGATGTCCTCAATTCAAACATCACCATTGACTTTACCACAAGAAAACATGGAAATTGAAAACCAAAAAGCTAGCCCACTTGGTGAATCTCTAGAGCGCCTTGCATTCTACTTGTCTCTAGGCATGACAAATCATGGAGACTATCTCAAAGGGGAGGCCTTCAAGAACCTTGAGGCTGCTTTGAGGGCACTCTATCAAGGGCTCCCAATTGGGAAAATTGCCCACTTTGTAGCTGTTTCAGCAATTCTTGAAGCCATGCCACAAGATTGTGATGTTGTACACATAGTGGACTTTTGTATTGGACATGGGGTTCAATGGCCTCCAATGATTGAGGCTATTGCACACATGAACAAAACATTGAAATTGACATCAATTAAAATGGGTGATGAGGGTCCTGAATGTGTTTCCACTCCATGCAATTTTGAGGAAACTAGAAGGCAGCTCTATGAGCATGCCAAATCCTGTGGTTTGAAGTTAAAGGTAGAGGAGAAAGGAATGGAGGAACTTGTTACtgagattaagaaaataaacaaaaggggTGGGAGAGAGAGTTTTTGGCCTTCAATTGCATGGGTAGCTGAGGATTTGACCAACAACTCTGGCAGCAGGCGAATAATCACTTTTGGGGATGGGGCTGCTTTtgagaaagtgaaaaataacTTGAATTTCAGGTCATTCTTTGATGGACATTTGGTGTATTACCAAGCCTTATTGGAATCAATTGAATCACATTTCCCAACTTGTTTCTCAGAAGCAAGAATTGCCATGGAGCAGCTTTTTTTGCAACCTTGTATCTCTTCTCTTGATTGGTTACAAACATGGGAGGAGATGAAAAGGGATGGCCATCTTGAGGCAGAGATTAGTTTAGAGGGCTGCAAATtgagcaaaaatattttaatggaaGTCAGAGAAGTGTTGAGAGGATGTGAAGGTTCGTATCAGGCTAGGATTGAAGGACAACATGACAACGAACTAGTTTTGGAGTGGAAAGGAACACAACTATTAAGATTTTTGACTTGGAAAAACTGA 1470 0.4088 MMQPEILHSPWSFLEDMNSTFDQDVESYGFTMYDHVGDCGPYGFAMDDHVGDCGLSTLLSTLEDTASEVCSIPFPSSPIFPNDHVQYPINEETLQLPSLMELDDFDSILSAQIISTQGHGESEGNFPSQNLSSEVENAWSPTPSVRSEMSSIQTSPLTLPQENMEIENQKASPLGESLERLAFYLSLGMTNHGDYLKGEAFKNLEAALRALYQGLPIGKIAHFVAVSAILEAMPQDCDVVHIVDFCIGHGVQWPPMIEAIAHMNKTLKLTSIKMGDEGPECVSTPCNFEETRRQLYEHAKSCGLKLKVEEKGMEELVTEIKKINKRGGRESFWPSIAWVAEDLTNNSGSRRIITFGDGAAFEKVKNNLNFRSFFDGHLVYYQALLESIESHFPTCFSEARIAMEQLFLQPCISSLDWLQTWEEMKRDGHLEAEISLEGCKLSKNILMEVREVLRGCEGSYQARIEGQHDNELVLEWKGTQLLRFLTWKN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1064 489 ProSiteProfiles GRAS family profile. 132 488 IPR005202 -
Ssu3g1064 489 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 26 169 - -
Ssu3g1064 489 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 341 488 - -
Ssu3g1064 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 169 IPR005202 -
Ssu3g1064 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 341 488 IPR005202 -
Ssu3g1064 489 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 171 331 IPR005202 -
Ssu3g1064 489 Pfam GRAS domain family 365 488 IPR005202 -
Ssu3g1064 489 Pfam GRAS domain family 152 309 IPR005202 -
Ssu3g1064 489 MobiDBLite consensus disorder prediction 119 147 - -
Ssu3g1064 489 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 171 331 - -
Ssu3g1064 489 Coils Coil 306 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1064 Ssu-Chr3 24901215 24902837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1064 169 488 GRAS Transcription Factor Family AT5G66770 24.929 4.30e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g1064 GRAS 3e-19 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1064 - - gmx:100784347 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1064 3 24901215 24902837 Ssu3g1064 3 24901215 24902837 ECH