Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1056 ATGGCCGCAAACTCTACCCCAAACTTTCACACCATTAACCCCACCGAGTTTCACTTATCGACACCAACCCACGATGGCTTGGTGTTCTGGCAGTACATGATAGCGGGCTCCATAGCCGGTTCCGTGGAACACACCGCCATGTTCCCCGTGGACACCCTAAAGACCCGCATGCAGGCCCTCAGTGGGCCGGGCCGGGCCCACCCCTTCGGCCTCCGACAATCCTTGGGCTCGATCATAAAACTTGAAGGCCCAAAGGGGCTCTACCGCGGGATTGGCGCAATGGGCCTCGGCGCAGGGCCCGCTCATGCAGTTTACTTCTCCGTGTACGAGTTTTGCAAACAAAGGTTAAGTGACATGAACAAGTTGAACAACCAGGAGCAACCCAAAAgtctCATTCATCATTGGACTGGCCATGTGAACAACACGGTGGTGCATGCGGTTAGTGGGGTGTGTGCGACGGTGGCGAGTGACGCAGTGTTTACGCCAATGGATGTGGTGAAGCAGAGGCTGCAGCTGAGGGGTAGTCCGTACAGGGGGGTGGTTGATTGCGTGAGGAGGGTGGCAATGGAGGAGAGAGTGGGGGCGTTCTTCGCGTCGTACCGGACGACGGTGGTGATGAACGCGCCGTTCACGGCGGTGCACTTCGCGACTTATGAGGCAGCGAAGAAGGGGATGGGGAAGGCAGCGGTGGATGATGGGAGGTGGGTGGTTCATGCCACGGCGGGGGCTGCTGCGGGAGCCTTGGCTGCTGCTGTCACGACGCCGCTTGATGTTGTTAAAACTCAGTTGCAGTGCCAGGGTGTCTGTGGATGCGATAAATTTTCTAGCAGTTCAATTGGGCATGTCATCCAAACAGTGATAAGGAAAGATGGATATCGGGGTCTTATGAGGGGATATATACCTAGGATGCTATTCCATGCACCTGCTGCTGCAATCTGTTGGTCTACCTACGAAGCTTCAAAATCTTTCTTTCAACAACTTAATGATAATAGCTGA 996 0.5482 MAANSTPNFHTINPTEFHLSTPTHDGLVFWQYMIAGSIAGSVEHTAMFPVDTLKTRMQALSGPGRAHPFGLRQSLGSIIKLEGPKGLYRGIGAMGLGAGPAHAVYFSVYEFCKQRLSDMNKLNNQEQPKSLIHHWTGHVNNTVVHAVSGVCATVASDAVFTPMDVVKQRLQLRGSPYRGVVDCVRRVAMEERVGAFFASYRTTVVMNAPFTAVHFATYEAAKKGMGKAAVDDGRWVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDKFSSSSIGHVIQTVIRKDGYRGLMRGYIPRMLFHAPAAAICWSTYEASKSFFQQLNDNS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1056 331 Pfam Mitochondrial carrier protein 234 326 IPR018108 -
Ssu3g1056 331 Pfam Mitochondrial carrier protein 142 227 IPR018108 -
Ssu3g1056 331 Pfam Mitochondrial carrier protein 29 118 IPR018108 -
Ssu3g1056 331 SUPERFAMILY Mitochondrial carrier 29 318 IPR023395 -
Ssu3g1056 331 PRINTS Mitochondrial carrier protein signature 45 59 IPR002067 GO:0055085
Ssu3g1056 331 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Ssu3g1056 331 PRINTS Mitochondrial carrier protein signature 32 45 IPR002067 GO:0055085
Ssu3g1056 331 PRINTS Mitochondrial carrier protein signature 155 173 IPR002067 GO:0055085
Ssu3g1056 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 140 224 IPR018108 -
Ssu3g1056 331 Gene3D Mitochondrial carrier domain 8 141 IPR023395 -
Ssu3g1056 331 Gene3D Mitochondrial carrier domain 142 331 IPR023395 -
Ssu3g1056 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 115 IPR018108 -
Ssu3g1056 331 PANTHER MITOFERRIN-LIKE 1 123 - -
Ssu3g1056 331 PANTHER MITOFERRIN-LIKE 136 330 - -
Ssu3g1056 331 PANTHER MITOFERRIN-1-RELATED 1 123 - -
Ssu3g1056 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 323 IPR018108 -
Ssu3g1056 331 PANTHER MITOFERRIN-1-RELATED 136 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1056 Ssu-Chr3 24736780 24741072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1056 7 331 Chloroplast and Mitochondria Gene Families AT1G07030 64.742 3.61e-142 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1056 K15113 - tcc:18597466 457.603