Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1048 atgaagcaaGTAGCAGGAATGGTGGTTTCCAATAAGATGCAGAAATCGGTTGTGGTGGCAGTGGACAGACTATTCTACCACAAATTGTACGACCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGCACAACCTCTGCAACATTGGTGACCGAGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTTGCTGAAATTCTTAAGAAGGCACGGATATATGTTCCACCCTCCACCCCGGTGTCTGATAATGTGAACTCCAGCTCTGAATCACCTGCTTCCTAA 306 0.4542 MKQVAGMVVSNKMQKSVVVAVDRLFYHKLYDRYVKRTSKFMAHDEHNLCNIGDRVRLDPSRPLSKHKHWVVAEILKKARIYVPPSTPVSDNVNSSSESPAS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1048 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 TIGRFAM uS17_bact: ribosomal protein uS17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 93 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Ssu3g1048 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu3g1048 101 PANTHER 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL 1 93 - -
Ssu3g1048 101 Gene3D - 1 79 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1048 Ssu-Chr3 24522309 24522727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1048 4 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.986 1.73e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1048 K02961 - gmx:100794499 191.045